Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j15
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z93785-1|CAB07858.1|  495|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain (...    28   7.9  
AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain (...    28   7.9  
AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain (...    28   7.9  

>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
           protein C56C10.12 protein.
          Length = 1599

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 617 VPPRNSQLPRSAS-IAAAEKHTNTRVVPSRAV 525
           +PPR+   PRS S +A + K + T V P R+V
Sbjct: 103 IPPRSMIFPRSTSMVAESRKESTTAVAPKRSV 134


>Z93785-1|CAB07858.1|  495|Caenorhabditis elegans Hypothetical
           protein W09D10.1 protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -3

Query: 602 SQLPRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSRGPMLMPDVNPNPSR*PSRKL 423
           SQLP+S S A  +  T    + SR     +G +T + ++  P L+   +P  S  P++K 
Sbjct: 140 SQLPKSLSQAQKKVGTPVVNIASRGSSSSNGHSTASAAAAAPSLLDFSDPPASTTPAKKA 199

Query: 422 V 420
           V
Sbjct: 200 V 200


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
 Frame = -3

Query: 620 NVPPRNSQLPRSASIAAAEKHTNTRVVP-----SRAVIMIDGSTTLTYSSRGPMLMP-DV 459
           N P  + Q+ + A     E  T TRV P     +   I    ST  +YSS  P   P   
Sbjct: 407 NAPSHSHQVDQFAEFKLVEPKTPTRVAPPPPPSAPPTIKFPISTGTSYSSTTPPTTPKPA 466

Query: 458 NPNPSR*PS 432
            P PSR P+
Sbjct: 467 PPPPSRIPN 475


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
 Frame = -3

Query: 620 NVPPRNSQLPRSASIAAAEKHTNTRVVP-----SRAVIMIDGSTTLTYSSRGPMLMP-DV 459
           N P  + Q+ + A     E  T TRV P     +   I    ST  +YSS  P   P   
Sbjct: 414 NAPSHSHQVDQFAEFKLVEPKTPTRVAPPPPPSAPPTIKFPISTGPSYSSTTPPTTPKPA 473

Query: 458 NPNPSR*PS 432
            P PSR P+
Sbjct: 474 PPPPSRIPN 482


>AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform c protein.
          Length = 784

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 403 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 516
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 90  PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127


>AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform a protein.
          Length = 814

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 403 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 516
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 90  PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127


>AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform b protein.
          Length = 853

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 403 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 516
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 129 PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,286,869
Number of Sequences: 27780
Number of extensions: 341633
Number of successful extensions: 853
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)