Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j14
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   3e-19
SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)                    30   1.4  
SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)                29   3.3  

>SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 68.5 bits (160), Expect(2) = 3e-19
 Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
 Frame = +1

Query: 187 IAATSVLQIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLD----QRGQKDLPDKNPDA 354
           + A S L   A E+R+  +NWQSY+  +MI+Q D+  I + D        K + D+  D 
Sbjct: 31  VIAGSRLVADAVEVRKQTVNWQSYVHGKMISQEDYSMIADYDCMDPVERAKIISDRG-DQ 89

Query: 355 CAEVFLNLLTHISKDHTIQYILVLIDDILS 444
            A+  L+LL  +++DHTI+YILVLIDD+L+
Sbjct: 90  LAKTCLSLLVKLTRDHTIRYILVLIDDMLN 119



 Score = 44.4 bits (100), Expect(2) = 3e-19
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = +1

Query: 562 IIAKLACWHPQLMDKSDLHFYLSWLKDQL 648
           I+AKLACW    + +SDL+F+LSWLK+QL
Sbjct: 123 IVAKLACWGNVRLPESDLNFFLSWLKNQL 151


>SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)
          Length = 289

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 1/106 (0%)
 Frame = +1

Query: 310 DQRGQKDLPDKNPDACAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKFS 489
           D R Q     +         + L   I+K H I Y L   D I   + +  ++  +    
Sbjct: 101 DIRNQSQYSHRQGQLITTRMMRLFDLIAKKHNISYWLTSADYIKFFEVAAKELPSDMFLQ 160

Query: 490 GNVWQPFLNLLNRQ-DEFVQHMTARIIAKLACWHPQLMDKSDLHFY 624
            ++  P+L   N+Q    + H    I  +   W+P+L DK   + Y
Sbjct: 161 NSISDPYLRPDNKQYAASITHPKVGIYQR--SWNPRLRDKKSCYKY 204


>SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)
          Length = 972

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
 Frame = -2

Query: 112 PNILSIK-----CSKTEKSFNICVFLEKQTIRHCSGERSC 8
           P+I+++K     C K   ++ +CV+  ++  + C+ +RSC
Sbjct: 743 PHIVNVKSKDKSCWKKSDNWQVCVYRRRRPFKVCNSQRSC 782


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,298,415
Number of Sequences: 59808
Number of extensions: 371553
Number of successful extensions: 883
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)