BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmmt10j14 (653 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpa... 136 1e-32 U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical p... 83 2e-16 U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical pr... 31 0.94 AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 30 1.2 AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 30 1.2 AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 30 1.2 AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 30 1.2 Z83226-1|CAB05724.2| 252|Caenorhabditis elegans Hypothetical pr... 28 6.7 >U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpase protein 15 protein. Length = 470 Score = 136 bits (329), Expect = 1e-32 Identities = 68/166 (40%), Positives = 103/166 (62%), Gaps = 8/166 (4%) Frame = +1 Query: 178 IDMIAATSVLQIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLDQRGQKDLPDK----- 342 +DM+ ATS LQ+ A E+R + NW SY +SQMI + D++FI + + K+ D+ Sbjct: 12 VDMLNATSRLQLEAQELRNNKPNWGSYFRSQMIQEDDYNFITSFENAKSKEERDQVLAAN 71 Query: 343 NPDA-CAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRET--KFSGNVWQPFL 513 N + A+ NL+T ++KD ++Y+L L DD+L EDKSRV++F + VW +L Sbjct: 72 NANGQAAKTMANLITQVAKDQNVRYVLTLFDDMLQEDKSRVELFHSAAARQKRTVWSQYL 131 Query: 514 NLLNRQDEFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLK 651 +L RQD F+ + + IIAKLAC+ M+ DL +Y S+LK+QLK Sbjct: 132 GILQRQDNFIVNQMSSIIAKLACFGTTRMEGQDLQYYFSFLKEQLK 177 >U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical protein F52E1.10 protein. Length = 451 Score = 83.0 bits (196), Expect = 2e-16 Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 6/153 (3%) Frame = +1 Query: 208 QIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLDQRGQK----DLPDKNPDACAEVFLN 375 Q A ++R + NW + +++MI Q D+DFIV Q + + + F++ Sbjct: 15 QKEADKVRAMKTNWGLFTRTRMIAQSDYDFIVTYQQAENEAERSTVLSVFKEKAVYAFVH 74 Query: 376 LLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETK--FSGNVWQPFLNLLNRQDEFVQH 549 L++ ISKD ++Y L LIDD+L ED +R IF + + + F+ LL+RQD+++ H Sbjct: 75 LMSQISKDDYVRYTLTLIDDMLREDVTRTIIFEDVAVLLKRSPFSFFMGLLHRQDQYIVH 134 Query: 550 MTARIIAKLACWHPQLMDKSDLHFYLSWLKDQL 648 +T I+ K+A + + +L + + LK+ + Sbjct: 135 ITFSILTKMAVFGNIKLSGDELDYCMGSLKEAM 167 >U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical protein K04A8.5 protein. Length = 411 Score = 30.7 bits (66), Expect = 0.94 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -3 Query: 495 VAREFRLTKYLHPRFIFRKNVINEHKNVLNGVVLAD 388 V FR+ Y H FI+ N ++ NV+ G++L D Sbjct: 373 VQGSFRIENYNHLHFIWGTNAASQVYNVITGIILQD 408 >AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical protein Y47H9C.4c protein. Length = 1045 Score = 30.3 bits (65), Expect = 1.2 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%) Frame = -2 Query: 562 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 392 C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490 Query: 391 *YASGG*ERLRHRHQDSCQADLFG 320 G HR + C AD FG Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511 >AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical protein Y47H9C.4b protein. Length = 1070 Score = 30.3 bits (65), Expect = 1.2 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%) Frame = -2 Query: 562 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 392 C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490 Query: 391 *YASGG*ERLRHRHQDSCQADLFG 320 G HR + C AD FG Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511 >AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical protein Y47H9C.4a protein. Length = 1111 Score = 30.3 bits (65), Expect = 1.2 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%) Frame = -2 Query: 562 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 392 C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490 Query: 391 *YASGG*ERLRHRHQDSCQADLFG 320 G HR + C AD FG Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511 >AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. Length = 1111 Score = 30.3 bits (65), Expect = 1.2 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%) Frame = -2 Query: 562 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 392 C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490 Query: 391 *YASGG*ERLRHRHQDSCQADLFG 320 G HR + C AD FG Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511 >Z83226-1|CAB05724.2| 252|Caenorhabditis elegans Hypothetical protein F43D2.1 protein. Length = 252 Score = 27.9 bits (59), Expect = 6.7 Identities = 9/31 (29%), Positives = 21/31 (67%) Frame = +3 Query: 21 PEQCRIVCFSKKTQILKLFSVLEHLIDNIFG 113 P++C+ VC + T +++S ++L+D++ G Sbjct: 91 PKKCKDVCQAAVTHYPEIYSKYQNLVDDVMG 121 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,267,569 Number of Sequences: 27780 Number of extensions: 278596 Number of successful extensions: 821 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 781 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 816 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1455289764 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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