SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j14
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-6|AAA91266.1|  470|Caenorhabditis elegans Vacuolar h atpa...   136   1e-32
U41109-12|AAB37043.1|  451|Caenorhabditis elegans Hypothetical p...    83   2e-16
U64849-2|AAC48051.1|  411|Caenorhabditis elegans Hypothetical pr...    31   0.94 
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      30   1.2  
Z83226-1|CAB05724.2|  252|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U50199-6|AAA91266.1|  470|Caenorhabditis elegans Vacuolar h atpase
           protein 15 protein.
          Length = 470

 Score =  136 bits (329), Expect = 1e-32
 Identities = 68/166 (40%), Positives = 103/166 (62%), Gaps = 8/166 (4%)
 Frame = +1

Query: 178 IDMIAATSVLQIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLDQRGQKDLPDK----- 342
           +DM+ ATS LQ+ A E+R  + NW SY +SQMI + D++FI + +    K+  D+     
Sbjct: 12  VDMLNATSRLQLEAQELRNNKPNWGSYFRSQMIQEDDYNFITSFENAKSKEERDQVLAAN 71

Query: 343 NPDA-CAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRET--KFSGNVWQPFL 513
           N +   A+   NL+T ++KD  ++Y+L L DD+L EDKSRV++F     +    VW  +L
Sbjct: 72  NANGQAAKTMANLITQVAKDQNVRYVLTLFDDMLQEDKSRVELFHSAAARQKRTVWSQYL 131

Query: 514 NLLNRQDEFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLK 651
            +L RQD F+ +  + IIAKLAC+    M+  DL +Y S+LK+QLK
Sbjct: 132 GILQRQDNFIVNQMSSIIAKLACFGTTRMEGQDLQYYFSFLKEQLK 177


>U41109-12|AAB37043.1|  451|Caenorhabditis elegans Hypothetical
           protein F52E1.10 protein.
          Length = 451

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 6/153 (3%)
 Frame = +1

Query: 208 QIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLDQRGQK----DLPDKNPDACAEVFLN 375
           Q  A ++R  + NW  + +++MI Q D+DFIV   Q   +     +     +     F++
Sbjct: 15  QKEADKVRAMKTNWGLFTRTRMIAQSDYDFIVTYQQAENEAERSTVLSVFKEKAVYAFVH 74

Query: 376 LLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETK--FSGNVWQPFLNLLNRQDEFVQH 549
           L++ ISKD  ++Y L LIDD+L ED +R  IF +       + +  F+ LL+RQD+++ H
Sbjct: 75  LMSQISKDDYVRYTLTLIDDMLREDVTRTIIFEDVAVLLKRSPFSFFMGLLHRQDQYIVH 134

Query: 550 MTARIIAKLACWHPQLMDKSDLHFYLSWLKDQL 648
           +T  I+ K+A +    +   +L + +  LK+ +
Sbjct: 135 ITFSILTKMAVFGNIKLSGDELDYCMGSLKEAM 167


>U64849-2|AAC48051.1|  411|Caenorhabditis elegans Hypothetical
           protein K04A8.5 protein.
          Length = 411

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 495 VAREFRLTKYLHPRFIFRKNVINEHKNVLNGVVLAD 388
           V   FR+  Y H  FI+  N  ++  NV+ G++L D
Sbjct: 373 VQGSFRIENYNHLHFIWGTNAASQVYNVITGIILQD 408


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
 Frame = -2

Query: 562 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 392
           C+ + A + +P+ GS     GR  K C      +   P+   Q +C+Q    C    G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490

Query: 391 *YASGG*ERLRHRHQDSCQADLFG 320
               G      HR +  C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
 Frame = -2

Query: 562 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 392
           C+ + A + +P+ GS     GR  K C      +   P+   Q +C+Q    C    G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490

Query: 391 *YASGG*ERLRHRHQDSCQADLFG 320
               G      HR +  C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
 Frame = -2

Query: 562 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 392
           C+ + A + +P+ GS     GR  K C      +   P+   Q +C+Q    C    G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490

Query: 391 *YASGG*ERLRHRHQDSCQADLFG 320
               G      HR +  C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
 Frame = -2

Query: 562 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 392
           C+ + A + +P+ GS     GR  K C      +   P+   Q +C+Q    C    G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490

Query: 391 *YASGG*ERLRHRHQDSCQADLFG 320
               G      HR +  C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511


>Z83226-1|CAB05724.2|  252|Caenorhabditis elegans Hypothetical
           protein F43D2.1 protein.
          Length = 252

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +3

Query: 21  PEQCRIVCFSKKTQILKLFSVLEHLIDNIFG 113
           P++C+ VC +  T   +++S  ++L+D++ G
Sbjct: 91  PKKCKDVCQAAVTHYPEIYSKYQNLVDDVMG 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,267,569
Number of Sequences: 27780
Number of extensions: 278596
Number of successful extensions: 821
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -