Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10j13
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 41 2e-04
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 34 0.024
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 33 0.042
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.2
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 27 2.1
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 2.8
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 27 2.8
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 27 3.7
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 27 3.7
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 27 3.7
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 6.4
SPCP20C8.02c |||S. pombe specific UPF0321 family protein 1|Schiz... 25 8.5
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 32 CAVCNQ---KTQRRCARCLNIYYCNTEHQRQDWKRHKSEC 142
C+ C + KTQR CA C I+YC+ Q+ DW HK EC
Sbjct: 49 CSTCTEEKVKTQR-CAACKIIHYCSKGCQKADWPFHKLEC 87
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 33.9 bits (74), Expect = 0.024
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Frame = +2
Query: 29 CCAV-CNQKTQR-RCARCLN----IYYCNTEHQRQDWKRHK 133
CC + CN + R +C +CLN Y+C E R W HK
Sbjct: 10 CCGIDCNNEADRLQCPKCLNDGVKSYFCGQECFRNSWNIHK 50
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.042
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Frame = +2
Query: 17 GGLACCA--VCNQKTQR-----RCARCLNIYYCNTEHQRQDWKRHKSEC 142
GG+ CA +CN+ + +C RC YC+ E Q Q W H C
Sbjct: 475 GGIRRCANLLCNKWEEHSRQFAKCRRCRRTKYCSKECQHQAWPGHSRWC 523
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/81 (19%), Positives = 33/81 (40%)
Frame = +2
Query: 32 CAVCNQKTQRRCARCLNIYYCNTEHQRQDWKRHKSECIPKLTKQLAKSDNFGECSTVTKE 211
C +C + C CL + H+R ++ R + K+ K ++S + T +E
Sbjct: 7 CQLCETRRPSICESCLKKQLYDFYHKRDEFSRDIESELEKVAKLKSESFSLKGKITQKEE 66
Query: 212 AAKEIGNIAQNYQHDVTKVCN 274
+ N+A + + C+
Sbjct: 67 LTYRLQNLAASLNEKKSLSCD 87
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 27.5 bits (58), Expect = 2.1
Identities = 21/72 (29%), Positives = 29/72 (40%)
Frame = +2
Query: 464 EDLNSESAITYEGSSEKEILNESVQQLSTVDFSTATGSNVLRTINSTDTNMPILPEPTAR 643
EDLNSE SSE EI E + D + V +T + DT + L + + +
Sbjct: 40 EDLNSEDEFYQSNSSEDEIEEEVQESTIADDIADILNQQVTQT-DEQDTPVLSLSKKSKK 98
Query: 644 VKEYPEASLKGS 679
A K S
Sbjct: 99 ALRKSNAEKKDS 110
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 41 CNQKTQRRCARCLNIYYCNTEHQRQDWK-RHKSECIPKLTKQLAKSDNF 184
CN+ Q C RCL T +R + K RH + L QLA+ ++F
Sbjct: 68 CNR--QYPCTRCLKYGEACTYDERDNRKKRHSLSYLHSLESQLARLESF 114
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 575 SNVLRTINSTDTNMPILPEPTARVKEYPEASLKGSVAPFNHMLNSY 712
+NVL D +L V PEAS+ GS PFN + Y
Sbjct: 157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY 202
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 503 SSEKEILNESVQQL-STVDFSTATGSNVLRTINSTDTNMPILPEPTARVKEYPE 661
S++K IL + + L S+ DFS ++V+RT++S + + T +++ PE
Sbjct: 52 STDKIILQQKREPLVSSTDFSQQKSTSVMRTLSSIPPESVV--QVTGKLQRRPE 103
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 503 SSEKEILNESVQQLSTVDFSTATGSNVLRTINSTDTNMPILPEPTA-RVKE 652
+ ++++LN +QQ+ +TA S+V ++N T N P P+ + R KE
Sbjct: 93 TQQEDLLNTLLQQMEDTKITTAEKSSVQSSLN-TKENTPQQPKKSRNRQKE 142
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 468 SSLVNTTLEITELSLCPDDVVLLFCVCCMFFLKSNLFCLLTLLPSETL 325
S+ V++ L + L C + V VC +F L++ LLT L ++ +
Sbjct: 505 STFVSSALAVELLKFCLNSYVNFVSVCTLFGLETPRDALLTTLSNKAV 552
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = -1
Query: 588 LNTLDPVAVEKSTVLSCCTDSFNISFSEEPS*VMALSLFKSSLVNTTLEIT 436
+ +L+ + V+KST+++ +NI+ E + +S + +SLVN EI+
Sbjct: 354 IESLEKLKVKKSTMINEIVHRYNINEINEEGIMTEVSKY-ASLVNKNYEIS 403
>SPCP20C8.02c |||S. pombe specific UPF0321 family protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 111
Score = 25.4 bits (53), Expect = 8.5
Identities = 7/11 (63%), Positives = 11/11 (100%)
Frame = -1
Query: 411 VVLLFCVCCMF 379
++LLFC+CC+F
Sbjct: 1 MLLLFCICCVF 11
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,568
Number of Sequences: 5004
Number of extensions: 49483
Number of successful extensions: 159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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