Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10j13
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15) 48 8e-06
SB_17099| Best HMM Match : zf-MYND (HMM E-Value=2.4e-11) 43 3e-04
SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06) 41 0.001
SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08) 40 0.002
SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11) 40 0.003
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 38 0.006
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_56686| Best HMM Match : Cadherin (HMM E-Value=0) 38 0.011
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 34 0.10
SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35) 34 0.14
SB_27679| Best HMM Match : zf-MYND (HMM E-Value=0.00039) 32 0.42
SB_15096| Best HMM Match : zf-MYND (HMM E-Value=4e-07) 32 0.42
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18) 32 0.42
SB_33005| Best HMM Match : zf-MYND (HMM E-Value=2.5e-07) 32 0.42
SB_30181| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_13693| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 32 0.56
SB_40973| Best HMM Match : zf-MYND (HMM E-Value=0.061) 31 0.74
SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_35167| Best HMM Match : zf-HIT (HMM E-Value=0.046) 31 1.3
SB_31125| Best HMM Match : zf-MYND (HMM E-Value=0.0003) 29 3.0
SB_19103| Best HMM Match : Filamin (HMM E-Value=0.0064) 29 3.0
SB_5241| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 29 3.9
SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034) 29 3.9
SB_34927| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_31687| Best HMM Match : DUF420 (HMM E-Value=6.3) 28 6.9
SB_50662| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12) 28 9.1
>SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15)
Length = 537
Score = 48.0 bits (109), Expect = 8e-06
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +2
Query: 14 EGGLACCAVCNQKTQRR--CARCLNIYYCNTEHQRQDWKRHKSECIPKLTKQLAKSDNFG 187
EG A CAVC QK C RC + YC+ Q W +HK C P T K+D+
Sbjct: 8 EGVNAYCAVCRQKQNHMKICTRCRGVLYCSRSCQSIHWPKHKVTCKPTAT---CKNDSI- 63
Query: 188 ECSTVTKEAAKEIGNIAQNYQHDVTKVCND 277
C V++E + I + + K ++
Sbjct: 64 -CDQVSRECGEIKTGIGSYFAGETPKTLHN 92
>SB_17099| Best HMM Match : zf-MYND (HMM E-Value=2.4e-11)
Length = 200
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 26 AC-CAVCNQKTQRRCARCLNIYYCNTEHQRQDWKR-HKSEC 142
AC C VC ++C++C +++YC+ +HQ WK HK+ C
Sbjct: 147 ACLCDVCGCSGTKKCSKCKSVFYCSRDHQVFGWKTGHKTAC 187
>SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 32 CAVCNQK--TQRRCARCLNIYYCNTEHQRQDWKRHKSECIPKLTKQ 163
C C+QK ++C+ CL+ +YC+ E Q + W HK C K+ K+
Sbjct: 55 CHKCSQKGGNMKQCSNCLSAWYCSKECQGEAWGSHKKRC-TKMAKK 99
>SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06)
Length = 167
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 32 CAVCNQKTQR--RCARCLNIYYCNTEHQRQDWKRHKSEC 142
CA C R +C +CL +YYC+ Q++D K H+ EC
Sbjct: 128 CANCGLAKIRLSKCGKCLKVYYCSRNCQKEDRKWHRQEC 166
>SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08)
Length = 690
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 8 NQEGGLACCAVCNQKTQRRCARCLNIYYCNTEHQRQDW 121
N +G C +C + +C C YYC EHQR DW
Sbjct: 9 NPKGVKLVCELCQKPAFVQCTDCRVTYYCGPEHQRADW 46
>SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11)
Length = 281
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 32 CAVCNQKTQ--RRCARCLNIYYCNTEHQRQDWKRHKSEC 142
C C +K +RC+RC YC QR W+ HKSEC
Sbjct: 51 CDFCLEKLSDLQRCSRCKFARYCGASCQRAAWRIHKSEC 89
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 32 CAVCNQKTQRRCARCLNIYYCNTEHQRQDWKRHKSECIPKLTKQLAKSD 178
C N + Q+ C+RC + YC+ + R WK HK+ C K + +K D
Sbjct: 11 CYATNVQLQK-CSRCKSTMYCSKDCPRSHWKHHKAICKAKKHSKDSKLD 58
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 32 CAVCNQKTQRRCARCLNIYYCNTEHQRQDWKRHKSECIPKLTKQLAKSDNFGECST 199
C C + ++C C I YC+ + Q+Q W +HK+ C K++ + E ST
Sbjct: 141 CTNCGKLGGKKCTAC-KIPYCSRKCQQQHWPQHKTTCTWKISTTYTPEAHSTETST 195
>SB_56686| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1888
Score = 37.5 bits (83), Expect = 0.011
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 41 CNQKTQRRCARCLNIYYCNTEHQRQDWKRHKSEC 142
C Q Q C+ C + YC + Q +DW +HK++C
Sbjct: 1846 CGQTAQFTCSACNSRGYCGQKCQLKDWGKHKTDC 1879
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 34.3 bits (75), Expect = 0.10
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +2
Query: 35 AVCNQKTQRRCARCLNIYYCNTEHQRQDWKRHKSECIPKLTKQLAKSDNFGECSTVTKEA 214
A C++K + + N+ YC H+ + H+++C + K L SD E E+
Sbjct: 76 AECSEKKPCKAGKYCNLLYCEDCHKHKMACYHRNQCCSGMAKSL--SDQVSELKQALNES 133
Query: 215 AKEIGNIAQNYQ 250
K +I +Q
Sbjct: 134 EKRNEDINHEFQ 145
>SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)
Length = 724
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Frame = +2
Query: 473 NSESAITYEGSSEK--EILNESVQQLSTVDFSTATGSNVLR----TINSTDTNMPILPEP 634
N S +E +EK + L+ES ++ S T G LR +++S+ ++P+LP P
Sbjct: 200 NEHSPEQFENHNEKTSQFLSESEKENSLNIELTVEGKPTLRKSGASLSSSSLSIPVLPSP 259
Query: 635 TARVKEYPEASLKGSVAP 688
+K +PE + S P
Sbjct: 260 YLEIKFHPEKTPDFSTVP 277
>SB_27679| Best HMM Match : zf-MYND (HMM E-Value=0.00039)
Length = 167
Score = 32.3 bits (70), Expect = 0.42
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 65 CARCLNIYYCNTEHQRQDW-KRHKSECI 145
C RC ++YC+ + + W RH+ EC+
Sbjct: 32 CTRCKEVFYCSKSCKLKAWNSRHREECV 59
>SB_15096| Best HMM Match : zf-MYND (HMM E-Value=4e-07)
Length = 84
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 59 RRCARCLNIYYCNTEHQRQDWKRHKSEC 142
+RC RC Y C+ Q +DWK HK C
Sbjct: 43 KRCVRCGETY-CSRGCQTKDWKEHKRIC 69
>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
Length = 516
Score = 32.3 bits (70), Expect = 0.42
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 65 CARCLNIYYCNTEHQRQDW-KRHKSECI 145
C RC ++YC+ + + W RH+ EC+
Sbjct: 406 CTRCKEVFYCSKSCKLKAWNSRHREECV 433
>SB_33005| Best HMM Match : zf-MYND (HMM E-Value=2.5e-07)
Length = 145
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 59 RRCARCLNIYYCNTEHQRQDWKRHKSEC 142
+RC RC Y C+ Q +DWK HK C
Sbjct: 104 KRCVRCGETY-CSRGCQTKDWKEHKRIC 130
>SB_30181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 59 RRCARCLNIYYCNTEHQRQDWKRHKSEC 142
+RC RC Y C+ Q +DWK HK C
Sbjct: 109 KRCVRCGETY-CSRGCQTKDWKEHKRIC 135
>SB_13693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 31.9 bits (69), Expect = 0.56
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = +2
Query: 32 CAVCNQKTQRR------CARCLNIYYCNTEHQRQDWKRHKSECIPKLTKQLAKSDN 181
CA C Q R C +C + YC+ EHQ+ D + H C + + +S+N
Sbjct: 84 CAFCEQDIPDRRGSPYKCIKC-SAKYCSKEHQKADLRFHHRRCGDGINGKRVESEN 138
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 31.9 bits (69), Expect = 0.56
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 44 NQKTQ-RRCARCLNIYYCNTEHQRQDWKRHKSEC 142
NQK+ C C YYC E +R W+ HK C
Sbjct: 3532 NQKSSFTSCPACYT-YYCTRECRRAHWREHKKVC 3564
>SB_40973| Best HMM Match : zf-MYND (HMM E-Value=0.061)
Length = 125
Score = 31.5 bits (68), Expect = 0.74
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 32 CAVCNQKTQRRCARCLNIYYC 94
CA C + +RC+RC N +YC
Sbjct: 103 CANCGKPATKRCSRCQNEWYC 123
>SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 5 MNQEGGLACCAVCNQKTQRRCARCLNIYYCNTEHQRQDWKRHKSECIPK---LTKQLAKS 175
+ + GL C +C Q + R RC ++ E R WKR+K + I + L +++A +
Sbjct: 518 LKHDRGLGCVKMCQQLSDRFPTRC-EVFRSFIESDR--WKRYKQQVIREMFGLRRKVANN 574
Query: 176 DNFGE 190
F +
Sbjct: 575 TTFAD 579
>SB_35167| Best HMM Match : zf-HIT (HMM E-Value=0.046)
Length = 632
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Frame = +2
Query: 5 MNQEGGLACCAVCNQKT------QRRCARCLNIYYCNTEHQRQDWKRHKSEC 142
+ QE C CN + C+ C + YC+ EH+R D + H+ C
Sbjct: 6 LEQENSSIRCTFCNTPIPWIICRKYTCSHC-HAQYCSKEHKRADQRYHRHRC 56
>SB_31125| Best HMM Match : zf-MYND (HMM E-Value=0.0003)
Length = 109
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 65 CARCLNIYYCNTEHQRQDWK-RHKSEC 142
C+ C++ +YCN Q +DW H+ +C
Sbjct: 77 CSGCMSKFYCNEICQERDWSLGHQFDC 103
>SB_19103| Best HMM Match : Filamin (HMM E-Value=0.0064)
Length = 617
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 56 QRRCARCLNIYYCNTEHQRQDWKRHKSECIPKLT 157
Q + C N +C E+ R+DWK+ C LT
Sbjct: 359 QTKVLVCTNENWCRVENMRRDWKQVLRPCRENLT 392
>SB_5241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = -1
Query: 522 NISFSEEPS*VMALSLFKSSLVNTTLEITELSLCPDDVVLLFCVCCMFFLKSNLFCLLTL 343
++SF E+ V A S+ K + TL I +L++C D+++++ + M+ K L
Sbjct: 72 SVSFWEQSFHVAAQSIAKDAKKPFTLNINQLNICTADMMIVW-LTVMYVYKGVLLLYGVF 130
Query: 342 LPSET 328
L ET
Sbjct: 131 LAYET 135
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +2
Query: 11 QEGGLACCAVCNQKTQRRCARCLNIYYCNTEHQRQDWKRHKSECIP--KLTKQLA 169
QEG C ++ +RC C N+ NT+ D K EC K K LA
Sbjct: 278 QEGRNVCQNCYRERYAKRCGACHNLIEGNTKFVAYDEKYFHRECFTCCKCNKPLA 332
>SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)
Length = 610
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 5 MNQEGGLACCAVCNQKTQRRCARCLNI-YYCNTEH 106
M QEGGL C C Q + AR L I Y N H
Sbjct: 110 MYQEGGLKCLEKCPQPCTYKFARALTIGSYLNYRH 144
>SB_34927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 408 VLLFCVCCMFFLKSNLFCLLTLLPSETL 325
VL FC CC FL LFCL+ L S ++
Sbjct: 15 VLTFCCCCGLFLL--LFCLVILYLSSSM 40
>SB_31687| Best HMM Match : DUF420 (HMM E-Value=6.3)
Length = 349
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -2
Query: 662 PQGTPSPGLSVQEE-WAYLYLYC*WFSTH--*IQSQWRSPPY 546
PQGTPS S+QEE W Y ++ ++H I S R P Y
Sbjct: 183 PQGTPSIAKSIQEENWNYPFMLFSRLNSHSNDIFSWCRQPKY 224
>SB_50662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 65 CARCLNIYYCNTEHQRQDW-KRHKSEC 142
C CL + YC++ QR+ W + H+ C
Sbjct: 120 CGGCLGVRYCSSLCQRRHWEEEHRRVC 146
>SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
Length = 156
Score = 27.9 bits (59), Expect = 9.1
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = +2
Query: 20 GLACCAVCNQKTQRRCARCLNIYYCNTE 103
G +CC+ C ++ R+C C + T+
Sbjct: 47 GHSCCSTCAKRVNRKCPECREEFGATTD 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,619,643
Number of Sequences: 59808
Number of extensions: 371231
Number of successful extensions: 1217
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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