Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j13
         (738 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    26   1.4  
AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax home...    24   4.3  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   7.4  

>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 569 TGSNVLRTINSTDTNMPILPEPTARVKEYPEASLKG 676
           T  + LR  ++ +TN  I+P P A    Y E + KG
Sbjct: 657 TKESRLRNRSARNTNHSIVPPPNANNLSYAETNHKG 692


>AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax
           homeotic protein IIa protein.
          Length = 327

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 566 ATGSNVLRTINSTDTNMPILPEPTARVKEYPEAS 667
           ATGSNV    NS+    P    P +RV  Y +AS
Sbjct: 124 ATGSNVPAQQNSSVPVRPSACTPDSRVGGYIDAS 157


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 143 IPKLTKQLAKSDNF 184
           IPKLT +LA SD F
Sbjct: 341 IPKLTTKLADSDGF 354


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 679,101
Number of Sequences: 2352
Number of extensions: 11926
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75676146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)