Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j13
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    26   0.42 
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    25   0.56 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.9  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   6.9  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   6.9  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 519 ISFSEEPS*VMALSLFKSSLVNTTLEITELSLCPDDVVLLFCV 391
           +SF+   + + A S+  ++L+   + +T L L  +D+ LLF V
Sbjct: 427 VSFTATLASIGAASIPSAALITMLIVLTALGLPTNDISLLFAV 469


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 33  APYAIKKLKEDAQDASIFTTVIRN 104
           APY  K +   +QD S F +++RN
Sbjct: 25  APYGYKNIMTLSQDTSHFASLVRN 48


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 569 TGSNVLRTINSTDTNMPILPE 631
           TG  VLRT N++  ++  LPE
Sbjct: 258 TGLTVLRTFNASYNSLDSLPE 278


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/59 (18%), Positives = 23/59 (38%)
 Frame = +2

Query: 479 ESAITYEGSSEKEILNESVQQLSTVDFSTATGSNVLRTINSTDTNMPILPEPTARVKEY 655
           E ++TY+    + +  E  QQL      +  G  + + +     N+    +    V+ Y
Sbjct: 659 EQSLTYQDQQYQVVSVEQYQQLKEQGQISQVGGGIQQNVEVLPENLVNAQQQVQAVRNY 717


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = +2

Query: 170 KSDNFGECSTVTKEAAKEIGNIAQNYQHDVTKVCNDGDV 286
           K   + EC         E GN  +N   ++T +  D +V
Sbjct: 58  KPQRYNECILKQFNIVDESGNFKENIVQELTSIYLDENV 96


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = +2

Query: 170 KSDNFGECSTVTKEAAKEIGNIAQNYQHDVTKVCNDGDV 286
           K   + EC         E GN  +N   ++T +  D +V
Sbjct: 58  KPQRYNECILKQFNIVDESGNFKENIVQELTSIYLDENV 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,340
Number of Sequences: 438
Number of extensions: 3624
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)