Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10j13
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 46 3e-05
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 44 1e-04
At1g70150.1 68414.m08072 zinc finger (MYND type) family protein ... 44 1e-04
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 44 1e-04
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 41 7e-04
At2g17900.1 68415.m02073 zinc finger (MYND type) family protein ... 38 0.005
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 38 0.009
At4g02220.1 68417.m00300 zinc finger (MYND type) family protein ... 37 0.016
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 36 0.028
At5g50450.1 68418.m06247 zinc finger (MYND type) family protein ... 35 0.049
At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34... 31 1.1
At4g26630.1 68417.m03837 expressed protein 29 4.3
At2g29970.1 68415.m03645 heat shock protein-related contains sim... 29 4.3
At3g52250.1 68416.m05742 myb family transcription factor contain... 28 5.6
At4g30860.1 68417.m04381 SET domain-containing protein low simil... 28 7.4
At3g03040.1 68416.m00299 F-box family protein contains F-box dom... 27 9.8
At2g29900.1 68415.m03631 presenilin family protein similar to pr... 27 9.8
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 45.6 bits (103), Expect = 3e-05
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +2
Query: 32 CAVCNQKTQRRCARCLNIYYCNTEHQRQDWKR-HKSEC 142
C+VC + T ++C+RC ++ YC+ Q DWK HK +C
Sbjct: 64 CSVCGKATTKKCSRCKSVRYCSAACQTSDWKSGHKLKC 101
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 44.0 bits (99), Expect = 1e-04
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 32 CAVCNQKTQRRCARCLNIYYCNTEHQRQDWKR-HKSEC 142
C+VC + ++C+RC ++ YC+ E QR DW H+ C
Sbjct: 61 CSVCGNFSTKKCSRCKSVRYCSAECQRSDWSSGHQRNC 98
>At1g70150.1 68414.m08072 zinc finger (MYND type) family protein
contains Pfam profile PF01753: MYND finger
Length = 387
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 41 CNQKTQRRCARCLNIYYCNTEHQRQDWKRHKSECIPKLTKQLAKSDNFGECS-TVTKEAA 217
C RRC +C + YC+ HQ W HK EC +L +Q+ + D + T T+EA
Sbjct: 12 CVGPPTRRCGQCGAVAYCSVSHQISHWSYHKEEC-ERLEEQMRRVDLLNDFPFTFTEEAT 70
Query: 218 KEI 226
++
Sbjct: 71 IQV 73
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +2
Query: 32 CAVCNQKTQRRCARCLNIYYCNTEHQRQDWKR-HKSEC 142
CAVC T RC++C ++ YC+++ Q W+R HK EC
Sbjct: 57 CAVCLYPTTTRCSQCKSVRYCSSKCQILHWRRGHKEEC 94
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 23 LACCAVCNQKTQRRCARCLNIYYCNTEHQRQDWK-RHKSECIP 148
L CA C + RC+RC ++ YC+ + Q W+ HK EC+P
Sbjct: 127 LHVCARCFGPAKTRCSRCKSVRYCSGKCQIIHWRVAHKDECVP 169
>At2g17900.1 68415.m02073 zinc finger (MYND type) family protein /
SET domain-containing protein contains Pfam profiles
PF00856: SET domain, PF01753: MYND zinc finger (ZnF)
domain; confirmed by cDNA (Paola Vittorioso--accession
not assigned yet (paola.vittorioso@uniroma1.it)
Length = 480
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +2
Query: 59 RRCARCLNIYYCNTEHQRQDWKRHKSEC--IPKLTKQLAK 172
++C+ C ++YC + Q+ +WK H+ EC + +L K+ K
Sbjct: 66 KKCSACQVVWYCGSSCQKSEWKLHRDECKALTRLEKEKRK 105
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 32 CAVCNQKTQRRCARCLNIYYCNTEHQRQDWKR-HKSECIP 148
C VC RC+RC + YC+ + Q W++ HK EC P
Sbjct: 74 CPVCYCLATTRCSRCKAVRYCSGKCQIIHWRQGHKDECHP 113
>At4g02220.1 68417.m00300 zinc finger (MYND type) family protein /
programmed cell death 2 C-terminal domain-containing
protein similar to SP|Q16342 Programmed cell death
protein 2 (Zinc finger protein Rp-8) {Homo sapiens};
contains Pfam profiles PF01753: MYND finger, PF04194:
Programmed cell death protein 2, C-terminal putative
domain
Length = 418
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 20 GLACCAVCNQ-KTQRRCARCLNIYYCNTEHQRQDWK-RHKSEC 142
G C C K + C+ C N YC+ +HQ W+ HK+EC
Sbjct: 184 GAPLCTWCGTWKGDKLCSGCKNARYCSPKHQALHWRLGHKTEC 226
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 35.9 bits (79), Expect = 0.028
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 59 RRCARCLNIYYCNTEHQRQDWK-RHKSECIP 148
RRC+ C + YC+ Q DWK RHK +C P
Sbjct: 318 RRCSVCGVVNYCSRACQALDWKLRHKMDCAP 348
>At5g50450.1 68418.m06247 zinc finger (MYND type) family protein
contains Pfam profile PF01753: MYND finger
Length = 336
Score = 35.1 bits (77), Expect = 0.049
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 59 RRCARCLNIYYCNTEHQRQDWK-RHKSECIP 148
RRC+ C + YC+ Q DW+ +HK EC P
Sbjct: 277 RRCSVCGKVNYCSRGCQALDWRAKHKVECTP 307
>At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34
kDa outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) {Solanum tuberosum}; contains Pfam profile
PF01459: Eukaryotic porin
Length = 276
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 455 FTKEDLNSESAITYEGSSEKEILNESVQQLSTVDFSTATGSNVLRTINSTDTNMPI 622
FTKEDL + + +G ++LN S + F+TA G+ V ++S D+ + +
Sbjct: 164 FTKEDLIASLTVNDKG----DLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITV 215
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 506 SEKEILNESVQQLSTVDFSTATGSNVLRTI 595
S+K + N V+ L VDFSTAT +++L+ +
Sbjct: 678 SDKVLKNAIVEILKRVDFSTATFTDILKEL 707
>At2g29970.1 68415.m03645 heat shock protein-related contains
similarity to 101 kDa heat shock protein; HSP101
[Triticum aestivum] gi|11561808|gb|AAC83689
Length = 1002
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 605 DTNMPILPEPTARVKEYPEASLKGSVAPFNHMLNS 709
D N+ +LP ++ YP++SL GS PF +S
Sbjct: 367 DWNLHLLPITSSSQGLYPKSSLMGSFVPFGGFFSS 401
>At3g52250.1 68416.m05742 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 1677
Score = 28.3 bits (60), Expect = 5.6
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +2
Query: 38 VCNQKTQRRCARCLNIYYCNTEHQRQDWKRHKSECIPKLTKQLA--KSDNFGECSTVTKE 211
+ + TQ+ A C++ YY K HKS+C K+ KQ A K K+
Sbjct: 911 IASSLTQKTTADCIDYYY----------KNHKSDCFGKIKKQRAYGKEGKHTYMLAPRKK 960
Query: 212 AAKEIGNIAQNYQHDVTKV-CNDGDV 286
+E+G + + DV+ + N G V
Sbjct: 961 WKREMGAASLDILGDVSIIAANAGKV 986
>At4g30860.1 68417.m04381 SET domain-containing protein low
similarity to IL-5 promoter REII-region-binding protein
[Homo sapiens] GI:12642795; contains Pfam profile
PF00856: SET domain
Length = 497
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 32 CAVCNQKTQRRCARC 76
C VC Q+TQ RC +C
Sbjct: 169 CFVCKQRTQWRCVKC 183
>At3g03040.1 68416.m00299 F-box family protein contains F-box domain
Pfam:PF00646
Length = 472
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 462 LVNTTLEITELSLCPDDVVLLFCVCC 385
L+N + EL LCPD + LL VCC
Sbjct: 293 LMNGIQNVQELHLCPDTLELL-SVCC 317
>At2g29900.1 68415.m03631 presenilin family protein similar to
presenilin [Drosophila melanogaster] GI:2062395;
contains Pfam profile PF01080: Presenilin
Length = 397
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/82 (25%), Positives = 43/82 (52%)
Frame = -1
Query: 615 IFVSVLLMVLNTLDPVAVEKSTVLSCCTDSFNISFSEEPS*VMALSLFKSSLVNTTLEIT 436
+F VLL+ + DP + ++ S T +++ S S+ + F +L+N+ + +
Sbjct: 29 MFTVVLLVCILNSDPSS-SSASFSSIATAAYSESDSDS-----SWDKFVGALLNSVVFVA 82
Query: 435 ELSLCPDDVVLLFCVCCMFFLK 370
+++ +VLLF + C+ FLK
Sbjct: 83 AITVATFVLVLLFYLRCVKFLK 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,515,260
Number of Sequences: 28952
Number of extensions: 250340
Number of successful extensions: 778
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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