Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j11
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.7  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 22  KMVSDFRKKKLLHVFTAFFDTNGSGTIDKKDFELAIE 132
           K++S  + ++ L +FT  F    SGT++  +    I+
Sbjct: 363 KIISSKKDRQELWIFTISFQKYMSGTLNSNETNFRIQ 399


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 366 GPVITSILKL-KYKLAV*ILPVTGAAGKLLPEG 271
           G VI  I+ +  Y +   ++PV G  G+ +PEG
Sbjct: 160 GQVILFIVLIWTYTIPWALMPVMGVWGRFVPEG 192


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 217 LSSADTDNDGQVSKEEWISLWEKFSS 294
           +S  DTD DG+++  E+   + K  S
Sbjct: 280 ISYDDTDGDGKLNVNEFYMAFSKLYS 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,059
Number of Sequences: 438
Number of extensions: 4022
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)