Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10j09
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 33 0.27
09_04_0559 + 18516732-18516746,18516893-18517330 31 0.61
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 30 1.9
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504... 30 1.9
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 30 1.9
07_01_0513 + 3828196-3828309,3828408-3828722,3828823-3828879,382... 29 2.5
05_04_0395 - 20921606-20921869,20921971-20922112,20922206-209223... 29 2.5
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 29 3.3
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 29 3.3
02_01_0201 - 1347868-1347925,1348040-1348135,1348447-1348523,134... 29 3.3
05_03_0066 + 7980038-7981468 29 4.3
10_08_0015 + 14116129-14116691,14116810-14117128,14117588-141186... 28 5.7
08_02_1167 + 24847689-24848156 28 5.7
01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823 28 5.7
11_01_0768 - 6442332-6443792 28 7.6
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 28 7.6
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 32.7 bits (71), Expect = 0.27
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +2
Query: 425 SEIPDAEAKSADIKVEEP---AAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 595
+E P AEA S + K EEP AA E +K E +A A ++E KP+ + E
Sbjct: 167 TEEPKAEASSEEAKTEEPKAEAAADEPAKEESKAEAAP-AEEAKPAEPEPEEKTVVVTEE 225
Query: 596 PNMVKKIDLAPTVESDAAAIP 658
K ++ AAA P
Sbjct: 226 EAATKTVEAIEETVVPAAAAP 246
>09_04_0559 + 18516732-18516746,18516893-18517330
Length = 150
Score = 31.5 bits (68), Expect = 0.61
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Frame = +2
Query: 416 AKSSEIPDAEAKSADIKVEEPA-----------AQPEDSKTEVQATVAEISKEEKPSATD 562
A + E AEA+ A+ K EPA A+PE ++ E + E++ E +A
Sbjct: 44 AVAEEAAPAEAEVAETKEAEPAAAEPAAEEVKEAEPEPAEPEAEPAKEEVAPEPAAAAEA 103
Query: 563 AEGSADSAAIIPNMVKKIDLAPTVESDAAAI 655
A+ AA + VK+ + AP ++ +
Sbjct: 104 EAKEAEPAAQVAEEVKEEEAAPAPAAEEVKV 134
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 416 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE-GSADSAA 589
AK ++E ++ D++ +E A + E+ + E +A E E+K DAE G+A+ A
Sbjct: 63 AKEEGASESEGEAMDVEAKESADEKEEEEAEAEADGDE--GEDKSDEMDAEAGAAEEEA 119
>04_04_1592 -
34649484-34649547,34650118-34650186,34650325-34650444,
34650630-34650742,34650824-34650898,34651224-34651346,
34651427-34651446,34652354-34652410,34652922-34653860,
34653961-34654189,34654296-34654439,34654527-34654601,
34655363-34655433,34656103-34656205,34656407-34656633,
34656791-34656908,34657239-34657369,34657709-34657802
Length = 923
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +2
Query: 443 EAKSADIKVEEPAAQPEDSKTEVQATVAEI-SKEEK--PSATDA-EGSADSAAIIPNMVK 610
E++ V AA S+ EV A + SK + SATD+ + SAD A ++P
Sbjct: 552 ESRKESTDVASAAAPKTSSRMEVAPDSAPLLSKAGRRVESATDSRKESADVAPVVPRTTS 611
Query: 611 KIDLAPTVESDAAA 652
++++AP + +A
Sbjct: 612 RMEMAPDSRREISA 625
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Frame = +2
Query: 311 PAIPEAKK--------DDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIK 466
P IPE+K+ + +P++ DI +S +P++ + + DIK
Sbjct: 1272 PQIPESKELSQQSKILPESSPDNHDIKCEYSSPTPIPESKELSLQSKILPESSSDNQDIK 1331
Query: 467 VEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 595
E+P+ P EV + ++I E D E S+ +I
Sbjct: 1332 CEDPSPTPISKSKEV-SPQSKILSESYLDNQDVERECPSSILI 1373
>07_01_0513 +
3828196-3828309,3828408-3828722,3828823-3828879,
3829668-3829826,3829918-3830028,3830173-3830259,
3830359-3830591,3830808-3830886,3831173-3831316,
3831529-3831568,3831667-3831729,3832193-3832224,
3832320-3832361,3832444-3832557
Length = 529
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Frame = +2
Query: 443 EAKSADIKVEEPAAQPEDSKTE--VQATVAEISK--EEKPSAT 559
E++S DIK + +AQP +K E VQAT++ + K EEK T
Sbjct: 394 ESQSEDIKPADSSAQPISAKKEPLVQATLSSMFKKAEEKKRCT 436
>05_04_0395 -
20921606-20921869,20921971-20922112,20922206-20922330,
20922758-20923984
Length = 585
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +2
Query: 416 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAA 589
A ++E P AEA++ E AA E+ KTE T E +KEE+P A A + + A
Sbjct: 133 APAAEEPKAEAEA-----EAEAAATEEPKTEEPKT-EEPAKEEEPKAAAAAAAEEPKA 184
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 446 AKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 595
A+ D E+ E+ + EVQ V E +P DAEG+A A ++
Sbjct: 255 AQDGDDVEEQKGEGEEEMEEEVQVEVQEKRGRGRPRKADAEGNALQARVL 304
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 473 EPAAQPEDSKTEVQATVAEISKEEKPSATDAEG 571
EP A PE + + Q + +K+ PSA D +G
Sbjct: 132 EPPAPPEPKQQQQQQQAGDAAKQAAPSADDEDG 164
>02_01_0201 -
1347868-1347925,1348040-1348135,1348447-1348523,
1349385-1349453,1349576-1349629,1350295-1350350,
1350487-1350694,1350978-1351066,1351163-1351187
Length = 243
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 516 ACTSVFESSG*AAGSSTLISADFASASGISDDF 418
+CT +F+SS +A + ++A FA AS D+F
Sbjct: 64 SCTYIFDSSDASASGAADVAATFAKASRKMDEF 96
>05_03_0066 + 7980038-7981468
Length = 476
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +2
Query: 419 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 598
K+ ++ D + K KVE + E SK E+ + E SKEE S A+SA+ +
Sbjct: 388 KAKKVLDRKLKEK--KVESNSTVTEKSK-ELTSRETEESKEELTSRKTDANDAESASSVA 444
Query: 599 NMVKK 613
+KK
Sbjct: 445 EAIKK 449
>10_08_0015 +
14116129-14116691,14116810-14117128,14117588-14118664,
14118754-14119056
Length = 753
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 437 DAEAKSADIKVEEPAA-QPEDSKTEVQATVAEISKEEKPSATDAEGSADS 583
+++ S D ++ A +P D +TE++ TV ++ E + G D+
Sbjct: 32 ESQGPSGDQTLDSDVANEPNDGETEIETTVDDVLSESTHEQVENHGDGDN 81
>08_02_1167 + 24847689-24848156
Length = 155
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 416 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQA 517
AK E P+AEA++A VEE AA P + E +A
Sbjct: 108 AKEPE-PEAEAEAAAAPVEEAAAAPVEVAEEAEA 140
>01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823
Length = 264
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +2
Query: 488 PEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAA 649
P K E VA + +E+ A D E D ++ +++K L P+VE DAA
Sbjct: 177 PTGDKVEFYG-VAVLKVDEQLRAEDVEVYYDPGELLGDLLKGPLLVPSVEKDAA 229
>11_01_0768 - 6442332-6443792
Length = 486
Score = 27.9 bits (59), Expect = 7.6
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +2
Query: 416 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 595
A + P AE+ +AD K PAA+ A KE P+A +A SAA
Sbjct: 292 ADKNAYPAAES-TAD-KETSPAAESTADTATSAAAGPTADKETSPAAESTADTATSAAAG 349
Query: 596 PNMVKKIDLA--PTVESDAAAI 655
K+ LA PT ++ +A+
Sbjct: 350 STADKETSLAAEPTADTATSAV 371
>09_04_0247 + 16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 437 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 586
D + K++ +K EE + SKTE A + KEEK A D+ +A++A
Sbjct: 1268 DPDFKNSYLKKEE-STDDASSKTEETTNNASLQKEEK--ANDSSKNAENA 1314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,783,284
Number of Sequences: 37544
Number of extensions: 217588
Number of successful extensions: 682
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -