Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10j09
(659 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98) 37 0.017
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 33 0.21
SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061) 31 0.63
SB_8499| Best HMM Match : DUF229 (HMM E-Value=0) 30 1.5
SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0) 30 1.5
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07) 30 1.9
SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045) 30 1.9
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 29 2.5
SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21) 29 2.5
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069) 29 3.4
SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
Length = 242
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +2
Query: 428 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 568
E P EA+S D KVE P + E + EV+ATV E+ + +A E
Sbjct: 22 ETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEVEAPMEEAAASVE 68
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 440 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKP-SATDAEGSADSAAIIPNMVKKI 616
A + A++ +EE Q ED++ V+ A + K E P T+A D A K +
Sbjct: 1172 ASVEEAEVPIEEAETQAEDTEGPVEDAEASVQKAEAPVEETEAPFEEDEAP-AEKTEKPV 1230
Query: 617 DLAPTVESDAAAI 655
+ P+V+ A +
Sbjct: 1231 EAGPSVQEAEAPV 1243
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 422 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATD-AEGSAD 580
++E+P +A ++ + E PAA+PE + E +A V + + EE + + AE D
Sbjct: 587 TAEVPIEDADTSTEEAESPAAEPEVAVKEAEAPVEDDAFEEPEALNEKAEDPKD 640
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/71 (23%), Positives = 36/71 (50%)
Frame = +2
Query: 446 AKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLA 625
AKS D+K E A++ ++ T+ ++ K+ KP++ + A +A + N K +++
Sbjct: 1912 AKSKDVKNAEEASRNDEDDTKTGNVSEDLIKQAKPTSKTRKKRASLSAKVTNFEKTVNVD 1971
Query: 626 PTVESDAAAIP 658
+S +P
Sbjct: 1972 VESQSSERELP 1982
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +2
Query: 467 VEEPAAQPEDSKTEVQATV--AEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPT 631
+E PA ED KT+ +AT AE+ +E KP+A D + SA S ++ I+++PT
Sbjct: 1129 LESPA---EDVKTDFEATSLEAEVFEEYKPTAKDVKESASSTV---HLAADIEISPT 1179
>SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)
Length = 410
Score = 31.5 bits (68), Expect = 0.63
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +2
Query: 437 DAEAKSADIKVEEPAAQPEDSKT----EVQATVAEISKEEKPSATDAEGSADSAAIIP 598
DAE S+ I V P+AQ E +T V + +A ++ E D+ D AIIP
Sbjct: 285 DAEPASSSISVSVPSAQAEQGRTTEGRPVSSDIATVAMEVPEVQGDSLADVDIDAIIP 342
>SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)
Length = 926
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +2
Query: 419 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 598
K++ +P+A +A + E AQPE K E + + + + T A+ A A P
Sbjct: 393 KATALPEAPKATAQPEAPEATAQPEAPKATALPEAPEATAQPEATETTAQPKAQKATAQP 452
>SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)
Length = 636
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +2
Query: 419 KSSEIPDAEAKSADIKVEEPAA-QPEDSKT-EV---QATVAEISKEEKPSATDAEGSADS 583
K + D + S+D +E A +P S T EV T A + EE+PS TD EGS +
Sbjct: 359 KQTTAHDPTSSSSDQLIEHSVAGRPSPSVTPEVAREDCTQASLQLEERPSNTDGEGSGQT 418
>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
Length = 1188
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 434 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAA 589
PD +A + + + + P +Q EDS + T +S EE+P ++ S SAA
Sbjct: 915 PDPQAPATNNQTDNPPSQYEDSSS--SETNGVLSDEEQPPLPLSDSSIQSAA 964
>SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)
Length = 191
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 425 SEIPDAE-AKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 577
S++P + AK+A+ + E+ A PE+ E A E K ++ D EG+A
Sbjct: 50 SKMPSKKGAKAAEAQPEKKAEAPEEKPAEDSKDQAVEESETKDASKDGEGNA 101
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +2
Query: 419 KSSEIPDAEAKSADIKVEEPAA-QPEDSK-TEVQATVAEISKEEKPSA-TDAEGSADSAA 589
K + D E K + + E+ + E +K TEVQ V E +KEE PS DAE A
Sbjct: 1025 KKRKDSDKERKVKEKEEEQKVKIEKEPNKVTEVQLMVEETNKEESPSTDRDAESELPKAG 1084
Query: 590 IIPNMVKKIDLAPT 631
+ ++ P+
Sbjct: 1085 SVSALLSVFATEPS 1098
>SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)
Length = 595
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 549 GFSSFEISATVACTSVFESSG*AAGSSTLISADFASASGISDDF 418
G SS ++ +C+SVFE + A SS L AD + + IS ++
Sbjct: 498 GGSSSQMDVMGSCSSVFEQAMLAGESSNLSDADKSESKDISKNY 541
>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
Length = 932
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Frame = +2
Query: 449 KSADIKVEEPAAQPED--SKTEVQATVAEISKEEKPSATDAEGS--ADSAAIIPNMVKKI 616
+S D + PA E QAT S P +TDA+ S A S A IP+
Sbjct: 626 RSTDAQASRPATSNATVPRSAETQATRPTTSNATIPRSTDAQASRQATSTATIPSAADAQ 685
Query: 617 DLAPTVESDAAAI 655
PT + A I
Sbjct: 686 ASKPTTPTSATPI 698
>SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 28.7 bits (61), Expect = 4.4
Identities = 24/76 (31%), Positives = 31/76 (40%)
Frame = +2
Query: 419 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 598
+ S + +AEA EE A+PE T E S E KP A+ E +A A P
Sbjct: 492 RKSPVSEAEAPKPSAAKEE--AEPEQMDTSEPEPAKEPSSEIKPEASKPE-TAKPEATSP 548
Query: 599 NMVKKIDLAPTVESDA 646
+ P ES A
Sbjct: 549 TDGEPAKPEPAEESSA 564
>SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1918
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +2
Query: 452 SADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII--PNMVKKI 616
SA + A++ D ++++ + A+ K+E+ SAT + ++S+ ++ P+ ++KI
Sbjct: 196 SATHRTLSAASRDLDKRSDISLSSAKPEKQEQESATVEQPESESSTMVLYPHQIQKI 252
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,769,182
Number of Sequences: 59808
Number of extensions: 257426
Number of successful extensions: 1136
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -