Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10j09
(659 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC034718-1|AAH34718.1| 633|Homo sapiens EPB41L2 protein protein. 34 0.52
AY047584-1|AAK95850.1| 1005|Homo sapiens protein 4.1G protein. 34 0.52
AL590014-3|CAI40761.1| 1005|Homo sapiens erythrocyte membrane pr... 34 0.52
AL358943-1|CAI20310.1| 1005|Homo sapiens erythrocyte membrane pr... 34 0.52
AF027299-1|AAC16923.1| 1005|Homo sapiens protein 4.1-G protein. 34 0.52
AB209522-1|BAD92759.1| 676|Homo sapiens EPB41L2 protein variant... 34 0.52
X15306-1|CAA33366.1| 1020|Homo sapiens heavy neurofilament subun... 31 2.8
BC073969-1|AAH73969.1| 1026|Homo sapiens NEFH protein protein. 31 2.8
BC008648-1|AAH08648.1| 358|Homo sapiens Unknown (protein for IM... 31 2.8
AF203032-1|AAF13722.1| 1026|Homo sapiens neurofilament protein p... 31 2.8
AB020652-1|BAA74868.2| 1034|Homo sapiens KIAA0845 protein protein. 31 2.8
AK001985-1|BAA92020.1| 531|Homo sapiens protein ( Homo sapiens ... 31 3.6
BC013402-1|AAH13402.1| 531|Homo sapiens Paf1, RNA polymerase II... 31 4.8
BC000017-1|AAH00017.1| 531|Homo sapiens Paf1, RNA polymerase II... 31 4.8
AJ401156-1|CAC20564.1| 531|Homo sapiens PD2 protein protein. 31 4.8
AC005239-1|AAC25503.1| 510|Homo sapiens F23149_1 protein. 31 4.8
>BC034718-1|AAH34718.1| 633|Homo sapiens EPB41L2 protein protein.
Length = 633
Score = 33.9 bits (74), Expect = 0.52
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 419 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 568
K +P+ E + A EE A + ++ K EV+ +SKEEKPS + E
Sbjct: 114 KEEPLPE-EQRQAKGDAEEMAQKKQEIKVEVKEEKPSVSKEEKPSVSKVE 162
>AY047584-1|AAK95850.1| 1005|Homo sapiens protein 4.1G protein.
Length = 1005
Score = 33.9 bits (74), Expect = 0.52
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 419 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 568
K +P+ E + A EE A + ++ K EV+ +SKEEKPS + E
Sbjct: 114 KEEPLPE-EQRQAKGDAEEMAQKKQEIKVEVKEEKPSVSKEEKPSVSKVE 162
>AL590014-3|CAI40761.1| 1005|Homo sapiens erythrocyte membrane
protein band 4.1-like 2 protein.
Length = 1005
Score = 33.9 bits (74), Expect = 0.52
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 419 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 568
K +P+ E + A EE A + ++ K EV+ +SKEEKPS + E
Sbjct: 114 KEEPLPE-EQRQAKGDAEEMAQKKQEIKVEVKEEKPSVSKEEKPSVSKVE 162
>AL358943-1|CAI20310.1| 1005|Homo sapiens erythrocyte membrane
protein band 4.1-like 2 protein.
Length = 1005
Score = 33.9 bits (74), Expect = 0.52
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 419 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 568
K +P+ E + A EE A + ++ K EV+ +SKEEKPS + E
Sbjct: 114 KEEPLPE-EQRQAKGDAEEMAQKKQEIKVEVKEEKPSVSKEEKPSVSKVE 162
>AF027299-1|AAC16923.1| 1005|Homo sapiens protein 4.1-G protein.
Length = 1005
Score = 33.9 bits (74), Expect = 0.52
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 419 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 568
K +P+ E + A EE A + ++ K EV+ +SKEEKPS + E
Sbjct: 114 KEEPLPE-EQRQAKGDAEEMAQKKQEIKVEVKEEKPSVSKEEKPSVSKVE 162
>AB209522-1|BAD92759.1| 676|Homo sapiens EPB41L2 protein variant
protein.
Length = 676
Score = 33.9 bits (74), Expect = 0.52
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 419 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 568
K +P+ E + A EE A + ++ K EV+ +SKEEKPS + E
Sbjct: 117 KEEPLPE-EQRQAKGDAEEMAQKKQEIKVEVKEEKPSVSKEEKPSVSKVE 165
>X15306-1|CAA33366.1| 1020|Homo sapiens heavy neurofilament subunit
protein.
Length = 1020
Score = 31.5 bits (68), Expect = 2.8
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Frame = +2
Query: 305 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEEPAA 484
E PA E K+D E +++A +K +E +A + D K EE A
Sbjct: 909 EAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEP----SKPAEKKEAAPEKKDTK-EEKAK 963
Query: 485 QPEDS-KTEVQATVAE--ISKE-EKPSATDAEGSADS 583
+PE+ KTE +A + +SKE KP A AE S+ +
Sbjct: 964 KPEEKPKTEAKAKEDDKTLSKEPSKPKAEKAEKSSST 1000
>BC073969-1|AAH73969.1| 1026|Homo sapiens NEFH protein protein.
Length = 1026
Score = 31.5 bits (68), Expect = 2.8
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Frame = +2
Query: 305 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEEPAA 484
E PA E K+D E +++A +K +E +A + D K EE A
Sbjct: 915 EAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEP----SKPAEKKEAAPEKKDTK-EEKAK 969
Query: 485 QPEDS-KTEVQATVAE--ISKE-EKPSATDAEGSADS 583
+PE+ KTE +A + +SKE KP A AE S+ +
Sbjct: 970 KPEEKPKTEAKAKEDDKTLSKEPSKPKAEKAEKSSST 1006
>BC008648-1|AAH08648.1| 358|Homo sapiens Unknown (protein for
IMAGE:3866238) protein.
Length = 358
Score = 31.5 bits (68), Expect = 2.8
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Frame = +2
Query: 305 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEEPAA 484
E PA E K+D E +++A +K +E +A + D K EE A
Sbjct: 247 EAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEP----SKPAEKKEAAPEKKDTK-EEKAK 301
Query: 485 QPEDS-KTEVQATVAE--ISKE-EKPSATDAEGSADS 583
+PE+ KTE +A + +SKE KP A AE S+ +
Sbjct: 302 KPEEKPKTEAKAKEDDKTLSKEPSKPKAEKAEKSSST 338
>AF203032-1|AAF13722.1| 1026|Homo sapiens neurofilament protein
protein.
Length = 1026
Score = 31.5 bits (68), Expect = 2.8
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Frame = +2
Query: 305 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEEPAA 484
E PA E K+D E +++A +K +E +A + D K EE A
Sbjct: 915 EAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEP----SKPAEKKEAAPEKKDTK-EEKAK 969
Query: 485 QPEDS-KTEVQATVAE--ISKE-EKPSATDAEGSADS 583
+PE+ KTE +A + +SKE KP A AE S+ +
Sbjct: 970 KPEEKPKTEAKAKEDDKTLSKEPSKPKAEKAEKSSST 1006
>AB020652-1|BAA74868.2| 1034|Homo sapiens KIAA0845 protein protein.
Length = 1034
Score = 31.5 bits (68), Expect = 2.8
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Frame = +2
Query: 305 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEEPAA 484
E PA E K+D E +++A +K +E +A + D K EE A
Sbjct: 923 EAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEP----SKPAEKKEAAPEKKDTK-EEKAK 977
Query: 485 QPEDS-KTEVQATVAE--ISKE-EKPSATDAEGSADS 583
+PE+ KTE +A + +SKE KP A AE S+ +
Sbjct: 978 KPEEKPKTEAKAKEDDKTLSKEPSKPKAEKAEKSSST 1014
>AK001985-1|BAA92020.1| 531|Homo sapiens protein ( Homo sapiens
cDNA FLJ11123 fis, clone PLACE1006167. ).
Length = 531
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 428 EIPDAEAKSADIKVEEPAAQPEDS-KTEVQATVAEISKEEKPSATDAEGSAD 580
E+ EA+ A ++ EP + E+ +TE + ++EK S+++ EGS D
Sbjct: 360 ELEAQEARKAQLENHEPEGEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSED 411
>BC013402-1|AAH13402.1| 531|Homo sapiens Paf1, RNA polymerase II
associated factor, homolog (S. cerevisiae) protein.
Length = 531
Score = 30.7 bits (66), Expect = 4.8
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 428 EIPDAEAKSADIKVEEPAAQPEDS-KTEVQATVAEISKEEKPSATDAEGSAD 580
E+ EA+ A ++ EP + E+ +TE + ++EK S+++ EGS D
Sbjct: 360 ELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSED 411
>BC000017-1|AAH00017.1| 531|Homo sapiens Paf1, RNA polymerase II
associated factor, homolog (S. cerevisiae) protein.
Length = 531
Score = 30.7 bits (66), Expect = 4.8
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 428 EIPDAEAKSADIKVEEPAAQPEDS-KTEVQATVAEISKEEKPSATDAEGSAD 580
E+ EA+ A ++ EP + E+ +TE + ++EK S+++ EGS D
Sbjct: 360 ELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSED 411
>AJ401156-1|CAC20564.1| 531|Homo sapiens PD2 protein protein.
Length = 531
Score = 30.7 bits (66), Expect = 4.8
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 428 EIPDAEAKSADIKVEEPAAQPEDS-KTEVQATVAEISKEEKPSATDAEGSAD 580
E+ EA+ A ++ EP + E+ +TE + ++EK S+++ EGS D
Sbjct: 360 ELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSED 411
>AC005239-1|AAC25503.1| 510|Homo sapiens F23149_1 protein.
Length = 510
Score = 30.7 bits (66), Expect = 4.8
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 428 EIPDAEAKSADIKVEEPAAQPEDS-KTEVQATVAEISKEEKPSATDAEGSAD 580
E+ EA+ A ++ EP + E+ +TE + ++EK S+++ EGS D
Sbjct: 339 ELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSED 390
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,091,400
Number of Sequences: 237096
Number of extensions: 1216167
Number of successful extensions: 3260
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3245
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -