Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j09
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro...    33   0.13 
At3g49990.1 68416.m05466 expressed protein                             32   0.29 
At5g26200.1 68418.m03118 mitochondrial substrate carrier family ...    32   0.39 
At5g63550.1 68418.m07976 expressed protein                             31   0.90 
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /...    30   1.2  
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate...    29   2.1  
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor...    27   2.5  
At2g45800.1 68415.m05696 LIM domain-containing protein similar t...    29   3.6  
At1g76810.1 68414.m08938 eukaryotic translation initiation facto...    29   3.6  
At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi...    28   4.8  
At2g02170.1 68415.m00153 remorin family protein contains Pfam do...    28   6.3  
At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein ...    27   8.4  
At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide famil...    27   8.4  
At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide famil...    27   8.4  

>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
           protein GI:1279562 from [Medicago sativa]
          Length = 557

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 434 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 586
           P A AK+  +K ++ ++  +DS +E +      +K  KP+A D+  S D +
Sbjct: 141 PAAAAKNGSVKAKKESSSEDDSSSEDEPAKKPAAKIAKPAAKDSSSSDDDS 191



 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/81 (23%), Positives = 35/81 (43%)
 Frame = +2

Query: 326 AKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEEPAAQPEDSKT 505
           +  DD + EDS+                  +  S   D++ +S D   E+PA +  D+K 
Sbjct: 185 SSSDDDSDEDSEDEKPATKKAAPAAAKAASSSDSSDEDSDEESED---EKPAQKKADTKA 241

Query: 506 EVQATVAEISKEEKPSATDAE 568
             +++  E S+ E+  + D E
Sbjct: 242 SKKSSSDESSESEEDESEDEE 262


>At3g49990.1 68416.m05466 expressed protein
          Length = 502

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 23/73 (31%), Positives = 33/73 (45%)
 Frame = +2

Query: 431 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVK 610
           +P   A+  D+K E P A+P   KT  Q +  E  K+E+ +A  AE     A II    K
Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEE--KKERKNAVKAE--KREARIIKKQTK 477

Query: 611 KIDLAPTVESDAA 649
            +    T  +  A
Sbjct: 478 MLYCGETQRAQRA 490


>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 342

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = -3

Query: 240 LTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 136
           +T+SS+  AT R+G + TTS + A G A LT+A A
Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146


>At5g63550.1 68418.m07976 expressed protein
          Length = 530

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +2

Query: 428 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 607
           E  D + +  +++VE+P+ +   SK  V+ +     K+++PS   A+GSA S       +
Sbjct: 320 EKTDTDDEKDEVEVEKPSKKKSSSKKTVEESSGSKGKDKQPS---AKGSARSGEKSSKQI 376

Query: 608 KKIDLAP 628
            K   +P
Sbjct: 377 AKSTSSP 383


>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
           (Alpha-tocopherol associated protein) (TAP) (bTAP)
           (Fragment) (SP:P58875)  {Bos taurus}
          Length = 683

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 434 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSA 556
           P  E K  + K EE   + E+ KTE ++  AE  +EEK +A
Sbjct: 123 PVKEEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEKSAA 163


>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
           contains weak similarity to vacuolar calcium binding
           protein [Raphanus sativus] gi|9049359|dbj|BAA99394
          Length = 152

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +2

Query: 305 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKV-EEPA 481
           E P + E KKD+ AP ++ +                  K  E+ + + + A + V EE  
Sbjct: 73  ETPEVVEIKKDEEAPVETPVV---VEDESKTEEVVEAKKEEEVEEKKTEEAPVVVEEEKK 129

Query: 482 AQPEDSKTEVQATV-AEISKEEK 547
            + E+ K  V+A+V A + K ++
Sbjct: 130 PEAEEEKPAVEASVTAPVEKADE 152


>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
           (CPK2) identical to calcium-dependent protein kinase
           isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 646

 Score = 27.1 bits (57), Expect(2) = 2.5
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 428 EIPDAEAKSADIKVEEPAAQPED-SKTEVQATVAEISKEEKPSATDAE 568
           E+P  E+K  ++ V+  +A+PE  S+++ + T  E + E KP  T AE
Sbjct: 109 EVPPEESKR-EVVVQPESAKPETKSESKPETTKPETTSETKPE-TKAE 154



 Score = 20.6 bits (41), Expect(2) = 2.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 317 IPEAKKDDIAPEDS 358
           +PE  K ++ PE+S
Sbjct: 102 VPEESKQEVPPEES 115


>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 226

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 302 DEVPAIPEAKKDDIAPE 352
           D+  +IPEAK+DD APE
Sbjct: 197 DDTASIPEAKEDDAAPE 213


>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to IF2
           protein [Drosophila melanogaster] GI:7108770; contains
           Pfam profile PF03144: Elongation factor Tu domain 2
          Length = 1294

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
 Frame = +2

Query: 416 AKSSEIPDAEAKSADIKVEEPAAQPED-------SKTEVQATVAEISKEEKPSATDAEGS 574
           A   E P AE  ++   VEE AAQPE         + E +   A   K++K    + E  
Sbjct: 308 AALGETPAAERPASSTPVEEKAAQPEPVAPVENAGEKEGEEETAAAKKKKKKKEKEKEKK 367

Query: 575 ADSAAIIPNMVK 610
           A +AA   + V+
Sbjct: 368 AAAAAAATSSVE 379


>At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing
           protein low similarity to CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 793

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 438 MLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQKKKNL 551
           M K+N+ + K+K ++L LK  K  YK  + K Q +  L
Sbjct: 740 MEKKNMFVDKYKYRMLFLKYHKTAYKGKAPKVQSESQL 777


>At2g02170.1 68415.m00153 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 486

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 437 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 586
           +AE K  ++KVE    + +D   +  AT+ E   EEK +A +A+    +A
Sbjct: 411 EAEMKKTEVKVERIKGRAQDRLMKKLATI-ERKAEEKRAAAEAKKDHQAA 459


>At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 586

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 404 FLRFSLQERFPVSRYRSLLGLYRPFWPLV 318
           FL F   E  PV  ++ L  L RP WPL+
Sbjct: 25  FLSFPRPENTPVQLFQLLHTLERPGWPLL 53


>At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide family
           protein contains Pfam profile: PF05558 DREPP plasma
           membrane polypeptide
          Length = 225

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 428 EIPDAEAKSADIKVEEPAAQPEDSKTE-VQATVAEISKEEKPSAT 559
           E+   E    ++K EEPA   E +KTE       EI +E K   T
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTEGTSGEKEEIVEETKKGET 177


>At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide family
           protein contains Pfam profile: PF05558 DREPP plasma
           membrane polypeptide
          Length = 225

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 428 EIPDAEAKSADIKVEEPAAQPEDSKTE-VQATVAEISKEEKPSAT 559
           E+   E    ++K EEPA   E +KTE       EI +E K   T
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTEGTSGEKEEIVEETKKGET 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,076,150
Number of Sequences: 28952
Number of extensions: 176845
Number of successful extensions: 527
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)