Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10j08
(446 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 32 0.25
SB_17568| Best HMM Match : Ldl_recept_a (HMM E-Value=0.04) 31 0.43
SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016) 31 0.43
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 31 0.57
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 31 0.57
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.76
SB_28257| Best HMM Match : Gp-FAR-1 (HMM E-Value=3.2) 29 1.3
SB_23562| Best HMM Match : DUF288 (HMM E-Value=1.1) 29 1.3
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 29 1.8
SB_47491| Best HMM Match : Acyl-CoA_dh_N (HMM E-Value=0.36) 29 2.3
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 29 2.3
SB_21494| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0) 28 4.0
SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09) 28 4.0
SB_58681| Best HMM Match : MAP65_ASE1 (HMM E-Value=3.3e-26) 28 4.0
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27) 28 4.0
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 27 5.3
SB_45585| Best HMM Match : Swi3 (HMM E-Value=0.37) 27 5.3
SB_6594| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_58221| Best HMM Match : TBC (HMM E-Value=2.9e-08) 27 5.3
SB_36059| Best HMM Match : TolA (HMM E-Value=0.1) 27 5.3
SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9) 27 5.3
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 27 7.1
SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4) 27 7.1
SB_36416| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31) 27 7.1
SB_49860| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_8891| Best HMM Match : Zot (HMM E-Value=2.5) 27 9.3
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 27 9.3
SB_43667| Best HMM Match : EHN (HMM E-Value=4.3) 27 9.3
SB_22025| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.12) 27 9.3
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 31.9 bits (69), Expect = 0.25
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +2
Query: 212 LREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK*KDK 346
LR+ E KEK +AK +EKER A + K E + K+ K+K
Sbjct: 322 LRQKEEKEKQRLEAKAAKEKERLEAKQKKEQERLEKQAEKEKKEK 366
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 182 QNRLSKKEAKLRE-IEAKEKVIRDAKLKEEKERASALEIKALEE 310
+ RL KK+ + ++ +E KEK + + KEE+ A E K EE
Sbjct: 366 KERLEKKQREEKDRLEKKEKKEEEKRKKEEEINAKIEEKKKREE 409
>SB_17568| Best HMM Match : Ldl_recept_a (HMM E-Value=0.04)
Length = 189
Score = 31.1 bits (67), Expect = 0.43
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 203 EAKLREIE-AKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK*KDK 346
E + EIE AK+K + D +L+ E+++ E++A ++ K+ KDK
Sbjct: 134 EKRRHEIELAKQKKLEDLRLQLEQKKQVVAELQATKDKVEAVEKEAKDK 182
>SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016)
Length = 1284
Score = 31.1 bits (67), Expect = 0.43
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +2
Query: 173 AFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK 334
A HQ ++SK + L E + +RD +L +EKE AS++++ LE+ A +K
Sbjct: 696 AHHQQKISKLNSCLEEAVSDMNSLRD-ELNKEKEAASSMKM-TLEKKAKEALEK 747
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 30.7 bits (66), Expect = 0.57
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 182 QNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALE-EMASGTAKK 334
++R +K+ ++ E + +E+ ++ K KEEKER E +A E E A AK+
Sbjct: 747 KDRKERKKIEMEEAKKREQEEKERKEKEEKERIEREEREAKEREYAERIAKQ 798
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 30.7 bits (66), Expect = 0.57
Identities = 12/43 (27%), Positives = 28/43 (65%)
Frame = +2
Query: 182 QNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEE 310
Q + ++E ++RE E ++K +++ ++++ +E A +ALEE
Sbjct: 176 QEQQEEEERRIREEEERQKALKEERMRKLQEEARLAAQRALEE 218
>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1126
Score = 30.7 bits (66), Expect = 0.57
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +2
Query: 197 KKEAKLREIEAKEKVIRDAKLKEEKERASALEI--KALEEMASGTAKK 334
++E +L+ E K ++ R+ ++EE+ER LE+ K +EE A K
Sbjct: 963 RRERELKAREEKLRLAREQMMREERERTLKLELERKRMEERLKDQASK 1010
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 182 QNRLSKKEAKLREIEAKEKVIR-DAKLKEEKER 277
+ R +K ++EIE KEK + K KEEKER
Sbjct: 911 RERTEEKARIMKEIEEKEKKEEAERKAKEEKER 943
>SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 30.3 bits (65), Expect = 0.76
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Frame = +2
Query: 197 KKEAKLREIEAKEKVIRDAKLKEEKERASALEIKAL-----EEMA---SGTAKK*KDKI 349
+KE KL E +AKE + A ++E++R ALE + L E++A + AKK K+K+
Sbjct: 259 EKERKLAEKKAKEDAAKAAAEEKERQRQEALEAERLAKEKEEQLAKEKATQAKKEKEKL 317
>SB_28257| Best HMM Match : Gp-FAR-1 (HMM E-Value=3.2)
Length = 497
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 182 QNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK*KDKIV 352
QN S+K R++ K V + A +++EK R + + +E + T K KD+IV
Sbjct: 153 QNEASEKSGDARQV--KRSVDKKASVRDEKNRHDEDKKQTEKEEGADTNKAPKDRIV 207
>SB_23562| Best HMM Match : DUF288 (HMM E-Value=1.1)
Length = 411
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -3
Query: 186 FWWKAPYRTPTVRK--DQRPNLIRG-DIRTG 103
+WW++PY P R+ +Q NL G D+ TG
Sbjct: 246 YWWRSPYGLPNCRRAYEQLSNLTLGHDLSTG 276
>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1106
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +2
Query: 182 QNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK*KDK 346
Q+ + +E+K RE + KEK R+ +L+ +KER + K EE KK K++
Sbjct: 974 QSEVDAEESKKREKKDKEKEKRERELQRKKER-DEQKRKKEEEKREREEKKRKEE 1027
>SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 29.1 bits (62), Expect = 1.8
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = +2
Query: 155 VGVLYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK 334
+G+L ++ + EA+ + I KEK +AK +EE+ER E K E A+ A+K
Sbjct: 295 IGMLKVLLNKGMTAVAEAEQKGI--KEKAETEAKKQEEEERKRDEEKKKAER-AAAEARK 351
Query: 335 *KDK 346
K+K
Sbjct: 352 KKEK 355
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +2
Query: 164 LYGAFHQNRLSKKEAKLR-EIEAKEKVIRDAKLKEEKERASAL 289
L F + +S+K+ +L E++A+EK ++ KLK EKE+++ L
Sbjct: 76 LVAKFQEEAVSEKQNRLSAELQAQEK-LQIEKLKSEKEKSAQL 117
>SB_47491| Best HMM Match : Acyl-CoA_dh_N (HMM E-Value=0.36)
Length = 431
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 191 LSKKEAKLREIEAKEKVIRDAKLKEE-KERASALEIKALEEM 313
L+ +E + R I+ +E + AKLKEE +ER +K LE++
Sbjct: 106 LTPEELEQRRIKRQEAAAKRAKLKEEAEERREQERMKKLEKL 147
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/58 (24%), Positives = 35/58 (60%)
Frame = +2
Query: 182 QNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK*KDKIVI 355
+ + ++A+L+E++ KEK+ ++ + K+++ER E K ++ K+ + K++I
Sbjct: 888 KEKKDNEKARLKEMKDKEKIEKEKREKDKREREEK-ERKRRQQQLEKEKKEKEKKLLI 944
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 197 KKEAKLREIEAKEKVIRDAKLKEEKER 277
K++ +LRE E KEK + K+EKER
Sbjct: 953 KQKERLREKEEKEKQKEAERAKKEKER 979
>SB_21494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 28.3 bits (60), Expect = 3.1
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 140 WSFLTVGV--LYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEM 313
W+FL V + L G L+KK KLR E EK+ K +EE R + L +
Sbjct: 96 WAFLRVLMVELTGFIDLQVLNKKYNKLRVTEFTEKLYNSFKSREEDMRNATKTALLLRKF 155
Query: 314 AS 319
A+
Sbjct: 156 AT 157
>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
Length = 1014
Score = 27.9 bits (59), Expect = 4.0
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Frame = +2
Query: 182 QNRLSKKEAKLREIE---AKEKVIRDAKLKEEKERASALEI-KALEEM 313
Q + KK++KL+EIE A+E KLKE ERAS LE K + E+
Sbjct: 182 QRTIEKKDSKLQEIETILAEEITPTLKKLKE--ERASYLEYQKVMREL 227
>SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09)
Length = 265
Score = 27.9 bits (59), Expect = 4.0
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 185 NRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIK-ALEEMASGTAKK*KDK 346
N+ ++KE K RE E K D ++EK+R ALE K A +M K K K
Sbjct: 46 NKSAEKERKEREEEDKLWEDDDKHEQQEKKRLEALERKNAARQMLEEEEKSLKGK 100
>SB_58681| Best HMM Match : MAP65_ASE1 (HMM E-Value=3.3e-26)
Length = 631
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +2
Query: 206 AKLREIEAKEKV---IRDAKLKEEKERASALEIKALEEMASG 322
++L+E +K+ V + D +K+EK+R AL+++ +++ G
Sbjct: 233 SELKEYNSKKNVTENVSDPTMKDEKQRLQALKLQHMQKFIEG 274
>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
Length = 228
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +2
Query: 170 GAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK*KDKI 349
G+F ++ +KKE ++ E +AK K R + + EKE A ++K ++ G K K+
Sbjct: 80 GSFKLSQDTKKEGEMAEKKAKAKE-RKLQKQLEKEAAEEEKVKKPKKSRDGEKTKKSKKV 138
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 182 QNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEE 310
Q + +K+ + E+ KEK + K+ +EK + +E + +E
Sbjct: 1184 QKKREEKKKREEEMREKEKEMEQNKIDQEKRKQELMESRRFQE 1226
>SB_45585| Best HMM Match : Swi3 (HMM E-Value=0.37)
Length = 341
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 182 QNRLSKKEAKLR-EIEAKEKVIRDAKLKEEKERASALEIKALEE 310
QNR ++++K+ + EK+ RD+K KEE+ER + E L E
Sbjct: 201 QNRTIEEKSKIAFDKWMSEKLKRDSKKKEEEERKAREEKDKLIE 244
>SB_6594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 185 NRLSKKEAKLREIEAKEKVIRDAKLKEEKER 277
NR+ K+EA E + K +R AK KE+K+R
Sbjct: 162 NRVEKREALKTRFEIERK-LRQAKKKEKKKR 191
>SB_58221| Best HMM Match : TBC (HMM E-Value=2.9e-08)
Length = 580
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 113 ISPLIKFGRWSFLTVGVLYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALE 292
ISP ++ W FL YG ++R + AK E + + + K+EK A E
Sbjct: 194 ISPSLRGDVWRFLLGYYKYGCTFESRKTLCRAKEDEYQTMKMQWQTISAKQEKRFAEFRE 253
Query: 293 IKAL 304
K L
Sbjct: 254 RKQL 257
>SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)
Length = 1936
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 191 LSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK 334
+ +K + ++ K ++ R K ++EKE + LE K LEE + K+
Sbjct: 1201 VDRKHLEQKKQRLKREMERQEKERKEKEMQALLEEKRLEEEKNAKRKR 1248
>SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +2
Query: 149 LTVGVLYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTA 328
+ V + G + + K ++L+ I V+R A K KE++S L+ E AS T+
Sbjct: 313 MVVDEITGTQNTASSAAKLSRLKTIVNYSSVVRSAPAKGGKEKSSLLDSLRSESFASPTS 372
Query: 329 KK 334
++
Sbjct: 373 EE 374
>SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)
Length = 766
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 168 YRTPT--VRKDQRPNLIRGDIRTGAPYGKSDILL*NCCTVKQ 49
Y TP VR+DQR ++I + + + ++LL N CT Q
Sbjct: 696 YTTPACLVREDQRRSIITQQLHAWSEKIREEVLLHNTCTPGQ 737
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 168 YRTPT--VRKDQRPNLIRGDIRTGAPYGKSDILL*NCCTVKQ 49
Y TP VR+DQR ++I + + + ++LL N CT Q
Sbjct: 516 YTTPARLVREDQRRSIITQHLHAWSEKIREEVLLHNTCTPGQ 557
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 168 YRTPT--VRKDQRPNLIRGDIRTGAPYGKSDILL*NCCTVKQ 49
Y TP VR+DQR ++I + + + ++LL N CT Q
Sbjct: 596 YTTPARLVREDQRRSIITQHLHAWSEKIREEVLLHNTCTPGQ 637
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +2
Query: 197 KKEAKLREIEAKEKVIRDAKLKEEKER 277
KKE + + EA+EK +++ +++ EKER
Sbjct: 346 KKEEEKKRKEAEEKRVKEEQIRLEKER 372
>SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)
Length = 330
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 145 LPHRRSSIRRLPPEQAIKERSETTRD*SQREGHPR 249
L +R R+LPPEQ K +++ R S ++ HP+
Sbjct: 209 LTPKRPKTRQLPPEQRCKS-TQSPRILSHQQSHPK 242
>SB_36416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 45 IIVLQYSNFITKCQIYHTEHLCVYRL*SSLDVG 143
++++ Y ITKC + H E L V SSL +G
Sbjct: 15 LVLVMYWYMITKCLVRHAEDLGVQPTKSSLLIG 47
>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
Length = 883
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 188 RLSKKEAKLREIEAKEKVIRDAKLKEEKE 274
++ + E K RE+ +E ++R AKL++E+E
Sbjct: 682 QIDEVERKKRELREREVLMRAAKLQQEEE 710
>SB_49860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +2
Query: 197 KKEAKLREIEAKEKVIRDA---KLKEEKERASALEIKALEEMASGTAK 331
+K+ K++ +E +EK +RD LKE KER LE + L + K
Sbjct: 309 EKQKKIK-LEQQEKELRDKLLKNLKEMKERKQELERELLRKQIKNKVK 355
>SB_8891| Best HMM Match : Zot (HMM E-Value=2.5)
Length = 392
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 194 SKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK 334
+KK + L E+E + RD + K+R SA E++ E+ GTA++
Sbjct: 270 TKKFSNLGEVEKDGRQGRDVTHDDVKQRMSAEEVRKYEK-RYGTARQ 315
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 179 HQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEM 313
HQ+ + +L E E +E+ R + +EE++R +A E L+E+
Sbjct: 556 HQDVEDDETKRLEEEERQEEEQRRQQEEEERQRIAAEEAARLQEL 600
>SB_43667| Best HMM Match : EHN (HMM E-Value=4.3)
Length = 114
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 179 HQNRLSKKEAKLREIEAKEK 238
HQ RLSK+E KL+ + K K
Sbjct: 62 HQKRLSKREKKLKRLAKKGK 81
>SB_22025| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.12)
Length = 495
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 194 SKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEM 313
SK R+++AK +R A+LK+ KE+ + KA+EE+
Sbjct: 194 SKLTQTCRDLKAKLDTLR-AELKKLKEKRKTPDDKAMEEL 232
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,243,162
Number of Sequences: 59808
Number of extensions: 208241
Number of successful extensions: 721
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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