Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j04
         (582 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   4.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.4  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   5.8  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   5.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.6  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   7.6  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 237 KEIDNDGNFTINYFFFEVISTLDFHNV 157
           ++++ DG   IN   F  ++ + F NV
Sbjct: 436 QDLNQDGVMNINGVLFVFLTNMTFQNV 462


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 237 KEIDNDGNFTINYFFFEVISTLDFHNV 157
           ++++ DG   IN   F  ++ + F NV
Sbjct: 436 QDLNQDGVMNINGVLFVFLTNMTFQNV 462


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -2

Query: 269 VSSLHGLHHVAKKSTTTGTLLLITFSLKSSVLWIFTMSFFDAVREKFLKN 120
           ++ + GL    +K +T    +        SVL +F   FF+ +  K L N
Sbjct: 49  LTCIEGLRDCPRKYSTPLAKITTILQRYCSVLLVFLTYFFNILFRKKLLN 98


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -2

Query: 269 VSSLHGLHHVAKKSTTTGTLLLITFSLKSSVLWIFTMSFFDAVREKFLKN 120
           ++ + GL    +K +T    +        SVL +F   FF+ +  K L N
Sbjct: 45  LTCIEGLRDCPRKYSTPLAKITTILQRYCSVLLVFLTYFFNILFRKKLLN 94


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 50  FTKCLPKILLTYSFEIVH 103
           F K + KIL   SFE +H
Sbjct: 70  FYKVVEKILTQSSFECIH 87


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 222 DGNFTINYFFFEVIST 175
           + NFTI+Y  F + +T
Sbjct: 253 NANFTISYILFALFNT 268


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,064
Number of Sequences: 336
Number of extensions: 2817
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)