Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10j04
(582 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 1e-18
SB_2654| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 1e-15
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0) 60 2e-09
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 54 6e-08
SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 6e-08
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0) 53 2e-07
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0) 52 3e-07
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 52 3e-07
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 8e-07
SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07) 50 1e-06
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19) 46 2e-05
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 41 8e-04
SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41) 40 0.001
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27) 38 0.006
SB_6126| Best HMM Match : Thioredoxin (HMM E-Value=0.021) 37 0.014
SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33) 35 0.056
SB_13486| Best HMM Match : DUF1530 (HMM E-Value=2.3) 34 0.074
SB_21263| Best HMM Match : Thioredoxin (HMM E-Value=0.00093) 33 0.17
SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06) 33 0.22
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21) 32 0.39
SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019) 30 1.6
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2) 29 2.1
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22) 29 2.1
SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17) 29 2.8
SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16) 29 2.8
SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25) 29 2.8
SB_33897| Best HMM Match : DNA_pack_N (HMM E-Value=6) 29 3.7
SB_56028| Best HMM Match : Pyridox_oxidase (HMM E-Value=1.7) 28 4.8
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17) 28 4.8
SB_30009| Best HMM Match : RVT_1 (HMM E-Value=1.2e-18) 27 8.5
>SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/75 (52%), Positives = 57/75 (76%)
Frame = +1
Query: 244 WCNPCRLLTPRLESIIAESKGKVVLAKVDIDEQTDLALDYEVSSVPVLVAIKNGKVQNRL 423
WCNPC++LTPRL++IIAE GKV LAKVDID +LA ++ V++VP ++ +K GKV N+
Sbjct: 2 WCNPCKVLTPRLDAIIAEQDGKVDLAKVDIDVMGELAFNFGVNAVPTVIGMKGGKVINKF 61
Query: 424 VGLQDTDKLRKWIEQ 468
G+ + ++R +IEQ
Sbjct: 62 EGVVEPPQIRHFIEQ 76
>SB_2654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 79.8 bits (188), Expect = 1e-15
Identities = 34/62 (54%), Positives = 47/62 (75%)
Frame = +1
Query: 238 ATWCNPCRLLTPRLESIIAESKGKVVLAKVDIDEQTDLALDYEVSSVPVLVAIKNGKVQN 417
A WCNPC++LTPRL++IIAE GKV LAKVDID +LA ++ V++VP ++ +K GKV
Sbjct: 46 ACWCNPCKVLTPRLDAIIAEQDGKVDLAKVDIDVMGELAFNFGVNAVPTVIGMKGGKVME 105
Query: 418 RL 423
+
Sbjct: 106 HV 107
>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 362
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/86 (34%), Positives = 46/86 (53%)
Frame = +1
Query: 148 SKNDIVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESIIAESKGKVVLAKV 327
+K D+V++ T+ F+++V+NSK +V+FFA WC C+ L P E KGKV + +
Sbjct: 77 NKEDVVELTDTN-FEKEVLNSKDLWLVEFFAPWCGHCQRLAPEWAKAATELKGKVKVGAL 135
Query: 328 DIDEQTDLALDYEVSSVPVLVAIKNG 405
D T A Y+V P + G
Sbjct: 136 DATVHTVTASRYQVQGYPTIKVFAAG 161
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 54.4 bits (125), Expect = 6e-08
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 6/152 (3%)
Frame = +1
Query: 67 KNITNLFIRN--CTLKKNYGFLRNFSLTASKNDIVKIQSTDDFKEKVINSKVPVVVDFFA 240
+N+ N I+N T + F+ F + +D++ + ++ FK V + ++V+FFA
Sbjct: 507 QNLYNNAIQNNGWTFTQVSAFVLLFVGSTLSSDVLDLGDSN-FKSGVAGKDI-MLVEFFA 564
Query: 241 TWCNPCRLLTPRLES---IIAESKGKVVLAKVDIDEQ-TDLALDYEVSSVPVLVAIKNGK 408
WC C+ L P E+ + ++ V LAKVD E D Y VS P L +NG+
Sbjct: 565 PWCGHCKRLAPEYETAAEALKKNDPPVPLAKVDCTEAGKDTCSKYGVSGYPTLKIFRNGE 624
Query: 409 VQNRLVGLQDTDKLRKWIEQFASEETKAEIKA 504
+ G +D+ + +++++ A + EIK+
Sbjct: 625 MSKDYDGPRDSSGIIRYMKKQAG-PSSVEIKS 655
Score = 40.7 bits (91), Expect = 8e-04
Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Frame = +1
Query: 124 LRNFSLTASKNDIVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESI--IAE 297
+++ L S + VK+ ++FKE V + V+++F+A WC C+ L P+ + +
Sbjct: 851 IKSEPLPESNDGPVKVVVGENFKEIVNDPTKDVLIEFYAPWCGHCKSLEPKYNELGEKLQ 910
Query: 298 SKGKVVLAKVDIDEQTDLALDYEVSSVPVLVAI 396
+V+AK+D D ++ V + ++ I
Sbjct: 911 DVKDIVIAKMDA-TANDAPPNFSVQGIIIISII 942
>SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 54.4 bits (125), Expect = 6e-08
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 154 NDIVKIQSTDDFKEKVINSKVP-VVVDFFATWCNPCRLLTPRLESIIAESKGKVVLAKVD 330
N + +I+ +F + N+K VV+DF+A WC PCR + P+ + + E V AK+D
Sbjct: 10 NKVKEIEERAEFNSVINNTKDKLVVIDFYAEWCGPCRQIKPKFKKMALEEFKDVFFAKID 69
Query: 331 IDE 339
+DE
Sbjct: 70 VDE 72
>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 295
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Frame = +1
Query: 169 IQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESI--IAESKGKVVLAKVDIDEQ 342
I T D ++V+N + +V+F+A WC C+ L P E + V++AKVD D
Sbjct: 25 IDLTKDNFDEVVNGEKFALVEFYAPWCGHCKQLAPTYEQLGEAYTQSSDVIIAKVDADGD 84
Query: 343 TDLALDYEVSSVPVLVAIKNGK-VQNRLVGLQDTDKLRKWIEQ 468
DL ++V P + G G +D + K+IE+
Sbjct: 85 RDLGSRFDVKGFPTIKYFPKGSTTPEEYNGGRDINDFIKFIEE 127
>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/76 (34%), Positives = 40/76 (52%)
Frame = +1
Query: 160 IVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESIIAESKGKVVLAKVDIDE 339
IV ++ +F V+ S+ VVDF+A WC PC P+ E + KGKV AKV+ ++
Sbjct: 434 IVSEVNSKNFFTDVLASEDAWVVDFYAPWCGPCMRFAPKYEQLAKMLKGKVRAAKVNCEQ 493
Query: 340 QTDLALDYEVSSVPVL 387
L + + S P +
Sbjct: 494 DYGLCSEANIHSYPTV 509
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = +1
Query: 181 DDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESIIAESKGKVV-LAKVDIDEQTDLAL 357
+DF V + P VDFFA WC PC L P GK V VD + L
Sbjct: 292 EDFPSSVTSPSRPFFVDFFAPWCPPCMRLLPEYRKAARSFVGKPVGFGTVDCTVHSQLCH 351
Query: 358 DYEVSSVPVLVAIKNGKVQNRLVGLQDTDKLRKWIE 465
Y + S P + N + ++ +G + + +++E
Sbjct: 352 QYNIRSYPTTILYNNSQ-PHQFIGHHNALDIIEFVE 386
>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
Length = 308
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Frame = +1
Query: 145 ASKNDIVKIQSTDDFKEKVINSKVPVVV-DFFATWCNPCRLLTPRLESIIAESKGKVVLA 321
A + ++ ++ F ++ N+ +VV DF A+WC PC+ + P + S ++E + V
Sbjct: 4 APRGNVKVLELDSQFTAELTNAGTKLVVADFTASWCGPCKSIAP-VYSGLSEKYKQAVFL 62
Query: 322 KVDIDEQTDLALDYEVSSVPVLVAIKNGKVQNRLVGLQD---TDKLRKWI 462
K+D+D +LA V+++P KN + + G D ++KWI
Sbjct: 63 KIDVDVCQELAAKQGVTAMPTFQFFKNKVKVDEVRGADPKALEDAIKKWI 112
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 52.0 bits (119), Expect = 3e-07
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Frame = +1
Query: 133 FSLTASKNDIVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTP---RLESIIAESK 303
+S + + V + + +F E V +K V+V+F+A WC C+ L P + + K
Sbjct: 16 YSEEIKEEEDVLVLTEKNFDEAVAANK-HVLVEFYAPWCGHCKALAPEYAKAAGQLKSEK 74
Query: 304 GKVVLAKVDIDEQTDLALDYEVSSVPVLVAIKNGKVQNRLVGLQDTDKLRKWIEQ 468
++ LAKVD +T L ++V P + K+GK + G + ++ W+ +
Sbjct: 75 SEIKLAKVDATAETKLGEKFQVQGYPTIKFFKDGK-PSEYAGGRTAPEIVSWLNK 128
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 163 VKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESIIAESK--GKVVLAKVD 330
VK+ +F E N V V+F+A WC C+ L P + + + K +V+AK+D
Sbjct: 386 VKVLCGKNFDEVARNKDKNVFVEFYAPWCGHCKQLAPIWDQLGEKYKDHADIVVAKMD 443
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 50.8 bits (116), Expect = 8e-07
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Frame = +1
Query: 181 DDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESIIAESK---GKVVLAKVDIDEQTDL 351
++F E V+N + ++V+FFA WC C+ L P E E + + LA VD +++L
Sbjct: 184 ENFTE-VVNRESLMLVEFFAPWCGHCKQLAPEYEKAAQELQKHDPPIPLAIVDATIESEL 242
Query: 352 ALDYEVSSVPVLVAIKNGK 408
A YEV P L + GK
Sbjct: 243 AQKYEVQGYPTLKVFRKGK 261
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +1
Query: 151 KNDIVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESIIAESK---GKVVLA 321
+ D V + ++ +F ++VI ++V+F+A WC C+ L P + K V A
Sbjct: 59 EEDDVSVLNSKNF-DRVIEENNIILVEFYAPWCGHCKSLAPEYAKAAKKMKLNDPPVPFA 117
Query: 322 KVDIDEQTDLALDYEVSSVPVLVAIKNG 405
K+D +D+A ++VS P L + G
Sbjct: 118 KMDATVASDIAQRFDVSGYPTLKIFRKG 145
Score = 33.5 bits (73), Expect = 0.13
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Frame = +1
Query: 148 SKNDIVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESIIAESKG--KVVLA 321
S + V + F E V + K V+++F+A WC L P + + + +V+A
Sbjct: 522 SNKEPVTVVVGKTFDEIVNDPKKDVLIEFYAPWCGIA--LEPTFKKLGKHFRNDKNIVIA 579
Query: 322 KVDIDEQTDLALDYEVSSVPVL--VAIKNGKVQNRLVGLQDTDKLRKWIEQFASEETKAE 495
K+D D+ Y V P + K+ K + G ++ L K++E+ A+ E
Sbjct: 580 KIDA-TANDVPSTYAVEGFPTIYFATSKDKKNPIKFDGGRELKDLIKFVEEKATVSLSKE 638
>SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07)
Length = 438
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +1
Query: 193 EKVINSKVPVVVDFFATWCNPCRLLTPRLESIIAESKGKVVLAKVDID 336
+K + +DF ATWC PCR++ P+ E + E KG V AKVD+D
Sbjct: 5 DKFLKDNEVAAIDFTATWCGPCRMIGPKFEEMAKEFKG-VKCAKVDVD 51
>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Frame = +1
Query: 193 EKVINSKVPVVVDFFATWCNPCRLLTPRLESI--IAESKGKVVLAKVDIDEQTDLAL--D 360
+++I K ++VDF+A WC+ C+ L P+LE +KG AKVD + L +
Sbjct: 31 DQMIREKDIMLVDFYAPWCHHCQELLPQLEGAANALAAKGLFQFAKVDCTDPRSKVLCDN 90
Query: 361 YEVSSVPVLVAIKNGKVQNRLVGLQDTDKLRKWIEQFAS 477
+++ P + K GK +G + L ++E S
Sbjct: 91 FKIEGYPSVKLFKFGKYAGDYIGQRTDAALVNYMESVTS 129
>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
Length = 975
Score = 46.0 bits (104), Expect = 2e-05
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Frame = +1
Query: 175 STDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESI--IAESKGKVVLAKVDIDEQTD 348
+TD F + VIN+ V++ F+ WC C P L ++ + +V + ++D D Q D
Sbjct: 523 TTDSFDDIVINNDQDVLLVFYTPWCGMCINFAPVLLAVARFFQDISQVSVTRIDAD-QND 581
Query: 349 LALDYEVSSVPVLVAIKNGKVQNRLVGLQDT----DKLRKWIEQFASEETKAEI 498
L + VSS P ++ G+ + + +T +L ++IE+ SE + +
Sbjct: 582 LPWNLTVSSYPSIILFPAGRKDSSIAFPSNTPRTATRLIEFIEEHGSEALRVAL 635
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 40.7 bits (91), Expect = 8e-04
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +1
Query: 220 VVVDFFATWCNPCRLLTPRLESIIAESKGKVVLAKVDIDEQTDLALDYEVSSVPVLVAIK 399
VV+DF ATWC PC+ + P ++ + VV KVD+D+ A + ++P
Sbjct: 31 VVIDFTATWCGPCKSIAPVFTNLSMKFM-DVVFLKVDVDQCQLTAESCGIRAMPTFHFYH 89
Query: 400 NGKVQNRLVGLQDTDKLRKWIEQF--ASEETK 489
N + L G D L I++ A++ TK
Sbjct: 90 NKAKIDELRG-ADPGALENKIKELRAATQSTK 120
>SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)
Length = 271
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Frame = +1
Query: 148 SKNDIVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTP---RLESIIAESKGKVVL 318
SK+D + TD+ ++ I S V+V +FA WC C + P + ++ + L
Sbjct: 46 SKDDSKVVFLTDESHDEFIKSHENVLVMYFAPWCGHCNEMKPNYYKAAQVLHDEDANCNL 105
Query: 319 AKVDIDEQTDLALDYEVSSVPVLVAIKNGKVQNRLVGLQDTDKLRK 456
A VD + D+A ++ P + K +D+ +++
Sbjct: 106 AAVDCTKHKDVAKKVALAGYPTVKLYKASNTAKAASAEEDSSLVKQ 151
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = +1
Query: 202 INSKVPVVVDFFATWCNPCRLLTPRLESIIAESKGKV--VLAKVDIDEQTDLALDYEVSS 375
+N+ V+V F+A WC C+ P+ E K + V AK+D + D+ EV+
Sbjct: 161 LNNTEHVLVMFYAPWCGHCKNAKPKYEKAAETFKDQPNRVFAKLDCTKFGDVCDKEEVNG 220
Query: 376 VPVLVAIKNGKVQNRLVGLQDTDKLRKWIEQ 468
P L GK G + T+ L ++E+
Sbjct: 221 YPTLRYYLYGKFVVEYDGDRVTEDLISFMEE 251
>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
Length = 472
Score = 37.9 bits (84), Expect = 0.006
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 8/119 (6%)
Frame = +1
Query: 169 IQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESIIAE----SKGKVVLAKVDID 336
++ D E + V+VDF+A WC C+ + P + + E S V LAKVD
Sbjct: 137 LELDDSNFEPAVQKHKFVLVDFYAPWCFHCKKMAPDYKDVAKELLILSHNSVRLAKVDCS 196
Query: 337 EQT----DLALDYEVSSVPVLVAIKNGKVQNRLVGLQDTDKLRKWIEQFASEETKAEIK 501
Y V +P + +GK G K K A +E +K
Sbjct: 197 ANNMATKKTCKKYNVKFLPTIYLFHDGKFVEEFEGNNRNKKSIKGFVMDAVKEADPSMK 255
Score = 31.9 bits (69), Expect = 0.39
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 184 DFKEKVINSKVPVVVDFFATWCNPCRLLTPRLES 285
+F E + ++ V+VDF+A WC+ C+ L+P ++
Sbjct: 60 NFNETIKKNEY-VLVDFYAPWCSDCQRLSPLFDT 92
>SB_6126| Best HMM Match : Thioredoxin (HMM E-Value=0.021)
Length = 293
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +1
Query: 187 FKEKVINSKVPVVVDFFATWCNPCRLLTPRLESIIAE---SKGKVVLAKVDIDEQTDLAL 357
+ E+V+ +KV V + F A+WC PC+ TP L+ E SK + + V D +TD L
Sbjct: 147 YPEEVLQNKV-VAIYFSASWCPPCQKFTPLLKDFYEEKIQSKEQFEIVFVSSD-KTDSDL 204
Query: 358 D 360
D
Sbjct: 205 D 205
>SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 35.5 bits (78), Expect = 0.032
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 136 SLTASKNDIVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESIIAE--SKGK 309
S +N I ++ TD + + K ++VDF+A WC+ C L P+ E + + K
Sbjct: 16 SYARKENPIFEL--TDQDFDNFLKDKEVMLVDFYAPWCSDCDNLRPKYEKAARDLAKEHK 73
Query: 310 VVLAK 324
V+AK
Sbjct: 74 FVMAK 78
>SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33)
Length = 386
Score = 34.7 bits (76), Expect = 0.056
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +1
Query: 181 DDFKEKVINSKVPVVVDFFATWCNPCRLLTPR---LESIIAESKGKVVLAKVDIDEQTDL 351
DD + + V+V F+A WC C+ + P + E + VLA VD ++ L
Sbjct: 89 DDMFDDFVAKNPSVLVMFYAPWCGHCKAMKPEYVDAAQTLKEQEIPGVLAAVDATKEAAL 148
Query: 352 ALDYEVSSVP 381
++V P
Sbjct: 149 GKRFKVEGYP 158
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +1
Query: 178 TDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESIIA--ESKGKVVLAKVDIDEQTD 348
+D + + K V+V F+A WC C+ P L S + K K L+ D D D
Sbjct: 201 SDTTFKSFVKKKKHVLVMFYAPWCGHCKKAKPELMSAAKHHKDKNKRALSLRDFDFSND 259
>SB_13486| Best HMM Match : DUF1530 (HMM E-Value=2.3)
Length = 222
Score = 34.3 bits (75), Expect = 0.074
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 223 VVDFFATWCNPCRLLTPRLESIIAESKGK 309
++DF+A+WC PCR+ P + ++ E K
Sbjct: 181 IIDFWASWCQPCRVENPAVVALYNEYHAK 209
>SB_21263| Best HMM Match : Thioredoxin (HMM E-Value=0.00093)
Length = 148
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +1
Query: 196 KVINSKVPVVVDFFATWCNPCRLLTPRLESIIAE---SKGKVVLAKVDIDEQTDLALDY 363
+ + KV + V F A WC PCR TP L+ E +G +V+ V D DY
Sbjct: 21 EAVKGKV-IAVYFSAHWCPPCRQFTPILKDFYEELGGEEGDLVIIFVSSDRDEAPMKDY 78
>SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06)
Length = 70
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 121 FLRNFSLTASKNDIVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLES 285
F+ F + +D++ + ++ FK V + ++V+FFA WC C+ L P E+
Sbjct: 2 FVLLFVGSTLSSDVLDLGDSN-FKSGVAGKDI-MLVEFFAPWCGHCKRLAPEYET 54
>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
Length = 186
Score = 31.9 bits (69), Expect = 0.39
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +1
Query: 226 VDFFATWCNPCRLLTPRLESIIAESKGKVVLAKVDIDEQTDLALDYEVSSVPVLVAIKNG 405
V F+A WC C L P E +AE D + D+ + +++ P L+ K+G
Sbjct: 111 VKFYAPWCIHCIKLAPIWER-LAE----------DFKDNADITIS-KINGYPTLMLFKDG 158
Query: 406 KVQNRLVGLQDTDKLRKWIEQ 468
+ G +D D L ++I Q
Sbjct: 159 VQKKEYSGNRDLDSLYRFIMQ 179
>SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019)
Length = 415
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +1
Query: 220 VVVDFFATWCNPCRLLTPRLES---IIAESKGKVVLAKVDIDEQTDLALDY 363
V + F A WC PCR TP L S + ++ + V D D DY
Sbjct: 176 VGIYFSAHWCPPCRAFTPELVSTYDAVRKANNAFEVIFVSSDRSQDSFKDY 226
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 232 FFATWCNPCRLLTPRLESIIAESKGK 309
F A WC PCR TP+L + K
Sbjct: 36 FSAHWCPPCRGFTPKLVEFYQNYRSK 61
>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
Length = 468
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 52 YKMLTKNITNLFIRNCTLKKNYGFLRNFSLTASKNDIVKIQSTDDFKEKVINS 210
Y L+KN L TL KNY L LT SKN + ++ KV+N+
Sbjct: 34 YSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNYLTLSKNYLTLSIKVLNT 86
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +1
Query: 52 YKMLTKNITNLFIRNCTLKKNYGFLRNFSLTASKN 156
Y L+KN + L TL KNY L LT SKN
Sbjct: 27 YLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKN 61
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 52 YKMLTKNITNLFIRNC-TLKKNYGFLRNFSLTASKN 156
Y L+KN L I+ TL KNY L LT SKN
Sbjct: 91 YSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSKN 126
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 61 LTKNITNLFIRNCTLKKNYGFLRNFSLTASKN 156
L+KN + L TL KNY L LT SKN
Sbjct: 16 LSKNYSTLSRNYLTLSKNYSTLSKNYLTLSKN 47
>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 55 KMLTKNITNLFIRNCTLKKNYGFLRNFSLTASKNDIVKIQSTDDFKEKV 201
K K+I LF LKK Y L S+TA +K++ ++ K+K+
Sbjct: 1269 KESAKHIKKLFDDEAKLKKKYTHLFTTSVTAGTEPELKLKWMNELKDKI 1317
>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
Length = 644
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 52 YKMLTKNITNLFIRNCTLKKNYGFLRNFSLTASKNDIVKIQSTDDFKEKVINS 210
Y L+KN L TL KNY L LT SKN + ++ KV+N+
Sbjct: 34 YSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNYLTLSKNYLTLSIKVLNT 86
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +1
Query: 52 YKMLTKNITNLFIRNCTLKKNYGFLRNFSLTASKN 156
Y L+KN + L TL KNY L LT SKN
Sbjct: 27 YLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKN 61
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +1
Query: 52 YKMLTKNITNLFIRNCTLKKNYGFLRNFSLTASKN 156
Y L+KN + L TL KNY L LT SKN
Sbjct: 120 YLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKN 154
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 52 YKMLTKNITNLFIRNC-TLKKNYGFLRNFSLTASKN 156
Y L+KN L I+ TL KNY L LT SKN
Sbjct: 91 YSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSKN 126
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 61 LTKNITNLFIRNCTLKKNYGFLRNFSLTASKN 156
L+KN + L TL KNY L LT SKN
Sbjct: 16 LSKNYSTLSRNYLTLSKNYSTLSKNYLTLSKN 47
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 61 LTKNITNLFIRNCTLKKNYGFLRNFSLTASKN 156
L+KN + L TL KNY L LT SKN
Sbjct: 109 LSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKN 140
>SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)
Length = 655
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 13 LPNNLQYCIVHCFYKMLTKNITNLFIRNCTLKK 111
+P LQYC+ + LT N+ F+RN T +K
Sbjct: 140 VPYELQYCLNNSTDDCLTANLAKNFLRNVTDRK 172
>SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16)
Length = 657
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 37 IVHCFYKMLTKNITNLFIRNCTLKKNYGFLRNFSLTASKNDIVKIQSTDDFKEKVIN 207
+VH +K+L K +L + L+ NYGF R+ + S D+ + S ++ N
Sbjct: 131 LVHYKHKLLAKQNKDLRLMQKILQHNYGFTRH--VLKSSTDMALLYSKKQLSSRIQN 185
>SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)
Length = 662
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 37 IVHCFYKMLTKNITNLFIRNCTLKKNYGFLRNFSLTASKNDIVKIQSTDDFKEKVIN 207
+VH +K+L K +L + L+ NYGF R+ + S D+ + S ++ N
Sbjct: 294 LVHYKHKLLAKQNKDLRLMQKILQHNYGFTRH--VLKSSTDMALLYSKKQLSSRIQN 348
>SB_33897| Best HMM Match : DNA_pack_N (HMM E-Value=6)
Length = 231
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -2
Query: 356 NAKSVCSSMSTFAKTTLPLLSAIIDSR-RGVSSLHGLHHVAKKSTTTGTLLLITFSLKSS 180
N S+C+++ T + L + +++S+ + V+ H L + K T+ + I+ +
Sbjct: 10 NEASICTAVLTQRTSDLSTFAGLLNSKNQSVAKTH-LQSLCTKKLTSTSKNAISQDIIYK 68
Query: 179 VLWIFTMSFFDAVR 138
WI T FF V+
Sbjct: 69 FRWIKTFRFFSRVK 82
>SB_56028| Best HMM Match : Pyridox_oxidase (HMM E-Value=1.7)
Length = 695
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +1
Query: 154 NDIVKIQSTDDFKEKVINSKVPVVVDFFA---TWCNPCRLLTPRLESIIAESKGKVVLAK 324
+D+ + + D K+ + + VVVD F T+ + R L + ++K A
Sbjct: 78 DDVRTLVAVGDTKDVTATAPIDVVVDLFVAMETFIDDVRTLVA-----VGDTKDVTATAS 132
Query: 325 VDIDEQTDLALDYEVSSVPVLVAIKNGK 408
+++D +A++ + V LVA+ + K
Sbjct: 133 MEVDVDLFVAMEEFIDDVRTLVAVGDTK 160
>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
Length = 1860
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 316 LAKVDIDEQTDLALDYEVSSVPVLVAIKNGKVQNRLVGLQ-DTDKLRKWIEQFASEETKA 492
+ KV++ + + + Y +S + L+ NGK ++ L+ + +TDK R W++ F+ + +
Sbjct: 837 MTKVEVANEPSIQMKYLLSLI--LLENSNGKTKDFLICAESETDKTR-WLDAFSPPKAEH 893
Query: 493 E 495
E
Sbjct: 894 E 894
>SB_30009| Best HMM Match : RVT_1 (HMM E-Value=1.2e-18)
Length = 552
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/47 (25%), Positives = 20/47 (42%)
Frame = +1
Query: 106 KKNYGFLRNFSLTASKNDIVKIQSTDDFKEKVINSKVPVVVDFFATW 246
K+ +GF R + K + ++KV+ + V V F A W
Sbjct: 11 KRKFGFSRKIFIVPGSQSAKKSSKAVESRKKVVKMLITVFVVFVACW 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,856,346
Number of Sequences: 59808
Number of extensions: 294251
Number of successful extensions: 825
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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