Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10j03
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 52 9e-08
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 31 0.13
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 28 1.6
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 27 2.8
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 27 3.7
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 26 6.5
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||... 26 6.5
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 25 8.6
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 52.0 bits (119), Expect = 9e-08
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 1/178 (0%)
Frame = +3
Query: 165 FVIQNHADIVSCVVMVFLVGLMVQSTSPIASLFISLHHNVSGVEPTREAPKGEPFTYESG 344
F++ +I ++ + L+ S P A FI L + + P G +Y G
Sbjct: 64 FLLVWQKEICLSIIAICFACLLSPSLRPYAEPFIFLSY---------KQPDG---SYGKG 111
Query: 345 WKDACAVFFYSLVCIVMHAILQEYFLDKISKKFHLSKSR-LSALNESGQLIVFHLVTLVW 521
KDAC F+ +V I+ +Y + + + + E G ++L
Sbjct: 112 PKDACFPIFWVIVFTAFRVIVMDYVFRPFVLNWGVRNRKVIIRFCEQGYSFFYYLCFWFL 171
Query: 522 GGDAILREGFIFNISQLWEGYPVHPMSFLLKLWWVVQASYWLHTIPELYFQRIKKDEW 695
G + N +L+E YP + MS L K ++++Q +WL I L+ ++ + D W
Sbjct: 172 GLYIYRSSNYWSNEEKLFEDYPQYYMSPLFKAYYLIQLGFWLQQILVLHLEQRRADHW 229
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 31.5 bits (68), Expect = 0.13
Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 2/141 (1%)
Frame = +3
Query: 219 VGLMVQSTSPIASLFISLHHNVSGVEPTR--EAPKGEPFTYESGWKDACAVFFYSLVCIV 392
+ ++ P SL+I+ N ++ EA + P+ Y+ + + C+ +
Sbjct: 112 ISVLTSVLLPYISLYIAAKSNPGKIDLKNWNEASRRFPYDYKIFFPNKCSTCKFEKPARS 171
Query: 393 MHAILQEYFLDKISKKFHLSKSRLSALNESGQLIVFHLVTLVWGGDAILREGFIFNISQL 572
H L ++K + + LN + +F L T+ +ILR G+ FN +
Sbjct: 172 KHCRLCNICVEKFDHHC-IWINNCVGLNNARYFFLFLLCTIQLLFHSILRLGYHFNALRD 230
Query: 573 WEGYPVHPMSFLLKLWWVVQA 635
YP SFL W+ +++
Sbjct: 231 MRQYP----SFLRSWWFAIKS 247
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +2
Query: 188 YCFMCCYGFPGWIDGTVYKSHCK-LVHQFTSQCQWSGTNERSAERRTFYL*IWVERCLCR 364
YC C P + + CK ++++ C W+G + RTF L ++ L
Sbjct: 401 YCLKCFQVKP---PRSYHCGACKRCINRYDHHCPWTGNCVGARNHRTFLLFVFTLSTLIP 457
Query: 365 VFLFTCLY 388
++ + Y
Sbjct: 458 IYFYVAFY 465
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 27.1 bits (57), Expect = 2.8
Identities = 24/92 (26%), Positives = 37/92 (40%)
Frame = +3
Query: 312 PKGEPFTYESGWKDACAVFFYSLVCIVMHAILQEYFLDKISKKFHLSKSRLSALNESGQL 491
P G T S W+ VC VM+ +Q+YF + + +++ L ++E
Sbjct: 646 PPGLDATAYSSWEKGDNFVTKKNVCTVMNLWVQKYFFEDLK-----ARNTLYLISEMRTF 700
Query: 492 IVFHLVTLVWGGDAILREGFIFNISQLWEGYP 587
+ H+V G IL E I LW P
Sbjct: 701 LRDHVVPSFHIGSVILSE-----IDNLWTEEP 727
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 453 KSRLSALNESGQLIVFHLVTLVWGGDAILREGFIFNISQLWEGY 584
+ +L+ LN ++ H ++ + D++LR+ ISQLWE Y
Sbjct: 612 QGQLACLNPQ---VLSHCLSHLNSPDSLLRQWACLCISQLWENY 652
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.8 bits (54), Expect = 6.5
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = +3
Query: 261 FISLHHNVSGVEPTREAPKGEPFTYES-GWKDACAVFFYSLVCIVMHAILQEYFLDKISK 437
FI+ +S + P E PK E GW C V + L I ++ + LD I+
Sbjct: 6 FINFIKPLSSLLPEVEGPKTHLELVEKLGWMAGCVVVYQILSIIPVYGAEKTDTLDPINN 65
Query: 438 KFHLSKSRLSALNESG 485
L S S L +G
Sbjct: 66 FRVLDGSSASGLMITG 81
>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +3
Query: 243 SPIASLFISLHHNVSGVEPTREAPKGEPFTYESGWKD 353
+P+ SL H SG+ P + G P + W D
Sbjct: 149 TPMVRALESLEHVFSGLYPESKRKMGLPVIFTRNWSD 185
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 716 SISYASCPLIFLYTLEVQ 663
S+SY L+FLY+LE+Q
Sbjct: 501 SLSYIHQTLVFLYSLEIQ 518
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,422,794
Number of Sequences: 5004
Number of extensions: 77054
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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