Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j03
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338...    31   0.73 
12_02_1028 + 25499354-25499809                                         29   5.1  
09_03_0157 + 12860078-12860390,12860474-12860622,12860967-12861128     28   6.8  
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653...    28   9.0  

>02_05_0336 +
           28033315-28033365,28033580-28033585,28033798-28033884,
           28034741-28034830,28035736-28037778,28037916-28038062,
           28038148-28038560,28038656-28038755
          Length = 978

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 544 SRSIASPPHTRVTRWNTISCPDSLRAL 464
           S+++A P H R  RW  + CP   R +
Sbjct: 670 SQNLAVPDHVRTLRWGLVECPSQFRCV 696


>12_02_1028 + 25499354-25499809
          Length = 151

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 153 FSHEFVIQNHADIVSCVVMVFLVGL 227
           F+HE  I + + + SC+V VF++GL
Sbjct: 75  FAHEDAICHVSIVASCIVRVFIIGL 99


>09_03_0157 + 12860078-12860390,12860474-12860622,12860967-12861128
          Length = 207

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 438 SWKFYQGSTPEE*HASQYRQVNRKTRHKHLSTQIHK*KVRLSALLSL 298
           SW + Q    +  + S   ++NRK    HLS  +H  K++L   + +
Sbjct: 160 SWNYLQKKAEKIVNQSNQSRINRKESLFHLSCNLHGEKLKLQCAIGV 206


>06_03_0793 +
           24662506-24663512,24664470-24664787,24664996-24665323,
           24665465-24665887,24665960-24666252,24666332-24666605,
           24666856-24667358,24667464-24667785,24667875-24668220,
           24668339-24668997,24669524-24669625,24669656-24670052,
           24670155-24670270,24670360-24670386
          Length = 1704

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 333 YESGWKDACAVFFYSLVCIVMHAILQEYFLDKISKKFHLSK 455
           + SG K+   +FF  L+  V+  +LQ  FL K++    L K
Sbjct: 375 FRSGLKEEIGLFFPMLILRVLENVLQPSFLQKMTVLNFLEK 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,741,870
Number of Sequences: 37544
Number of extensions: 483244
Number of successful extensions: 1065
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)