Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j03
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4288| Best HMM Match : DUF1165 (HMM E-Value=2.8)                    48   1e-05
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 30   1.7  
SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)           29   4.0  
SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11)                 29   4.0  

>SB_4288| Best HMM Match : DUF1165 (HMM E-Value=2.8)
          Length = 162

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = +3

Query: 330 TYESGWKDACAVFFYSLVCIVMHAILQEYFLD 425
           +Y +G KD C +FFYS+  IV+HAI+QEY LD
Sbjct: 8   SYTNGPKDFCTIFFYSMAWIVVHAIIQEYILD 39


>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 24/62 (38%), Positives = 28/62 (45%)
 Frame = -1

Query: 528 HHPIPELRDGIL*VVQIH*EHLTLILRGGTSWKFYQGSTPEE*HASQYRQVNRKTRHKHL 349
           H PI +LRDGIL V Q   + L L       W   Q +T E      Y QV R     +L
Sbjct: 292 HVPISKLRDGILRVGQ---KFLKLSKESVDDWFTQQSTTVEGARLKLYAQVCRYQLAPYL 348

Query: 348 ST 343
           ST
Sbjct: 349 ST 350


>SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)
          Length = 969

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 243 SPIASLFISLHHNVSGVEPTREAPKGEPFTYESGWKD 353
           SP+ SL  + H++ S V P   AP+  P T  S W D
Sbjct: 426 SPVRSLDFTAHNSASAVVPHPSAPQQSPLTGLS-WAD 461


>SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11)
          Length = 959

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 218 GWIDGTVYKSHCKLVHQFTSQCQWSGTNERSAERRT 325
           GW   T+Y+ H KL+ QF  +C  +  N R  +R T
Sbjct: 835 GWETWTIYRRHEKLLQQFHLRCLRNILNIRWQDRIT 870


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,169,180
Number of Sequences: 59808
Number of extensions: 586613
Number of successful extensions: 1516
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)