Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j03
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.56 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.2  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 22/89 (24%), Positives = 38/89 (42%)
 Frame = +3

Query: 153 FSHEFVIQNHADIVSCVVMVFLVGLMVQSTSPIASLFISLHHNVSGVEPTREAPKGEPFT 332
           F+H     NH  ++ CV    + G++V S    A  +  L   V G   +        + 
Sbjct: 297 FAHPREEFNHWTVMRCV-QAMIAGIVVISAG--ADAYPPLAAIVLGAIGSIVFYIISRYV 353

Query: 333 YESGWKDACAVFFYSLVCIVMHAILQEYF 419
           + S  +D C +    LVC ++ +IL  +F
Sbjct: 354 FRSALEDYCNIVATHLVCGILGSILVPFF 382



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 342 GWKDACAVFFYSLVCIVMH 398
           GW+  C +   +LV I+M+
Sbjct: 398 GWQMICLIVVIALVSIIMY 416


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 520 HTRVTRWNTISCPDSLRAL 464
           H R+T  + +S PDS+  L
Sbjct: 604 HNRITELSPLSVPDSVELL 622


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 218 GWIDGTVYKSHCKLVHQFTSQCQWS 292
           G I+    K   K   +F  +C+WS
Sbjct: 134 GNIEAVTTKEKAKFPQEFFPECKWS 158


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 261 TSLQWDL*TVPSIQPGK 211
           TS++WD+  VP+++  K
Sbjct: 202 TSVEWDILEVPAVRNEK 218


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 124 PIAGFTPIFVGINL 83
           P  G T +F+G+NL
Sbjct: 71  PARGLTAVFLGLNL 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,955
Number of Sequences: 438
Number of extensions: 5527
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)