Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j03
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein ...    31   0.80 
At2g24280.1 68415.m02901 serine carboxypeptidase S28 family prot...    30   1.4  
At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containi...    29   2.4  
At4g38200.1 68417.m05392 guanine nucleotide exchange family prot...    29   4.3  
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa...    29   4.3  
At5g22250.1 68418.m02591 CCR4-NOT transcription complex protein,...    28   7.5  
At1g65190.1 68414.m07391 protein kinase family protein contains ...    28   7.5  
At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,...    27   9.9  
At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family...    27   9.9  
At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family...    27   9.9  

>At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 410

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = +2

Query: 245 SHCKL----VHQFTSQCQWSGTNERSAERRTFYL*IWVERCLC-RVFLFTCLY 388
           SHC +    V +F   C W G        R F++ ++    LC  VF F C+Y
Sbjct: 161 SHCSICNNCVERFDHHCPWVGQCIAQRNYRFFFMFVFSTTLLCVYVFAFCCVY 213


>At2g24280.1 68415.m02901 serine carboxypeptidase S28 family protein
           contains Pfam profile: PF05577 Serine carboxypeptidase
           S28
          Length = 494

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 353 CLCRVFLFTCLYCDACYSSGVLP**NFQEVPPLKIKVKCSQ 475
           CLC VFLF  +  +A YS G      F  +  L++K K S+
Sbjct: 4   CLCLVFLFFSIVAEATYSPG-----GFHHLSSLRLKKKVSK 39


>At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 819

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 342 GWKDACAVFFYSLVCIVMHAILQE--YFLDKISKK 440
           GW D  A +  +LVC+ +H +++    F DK+ KK
Sbjct: 705 GWSDHAAAYNSALVCLCVHGMVKTACMFQDKMVKK 739


>At4g38200.1 68417.m05392 guanine nucleotide exchange family protein
           similar to Brefeldin A-inhibited guanine
           nucleotide-exchange protein 2 [Homo sapiens] SP|Q9Y6D5;
           contains Pfam profile PF01369: Sec7 domain
          Length = 1698

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 333 YESGWKDACAVFFYSLVCIVMHAILQEYFLDKIS 434
           Y SG K    +FF  LV  V+  +LQ  F+ K++
Sbjct: 377 YRSGMKSEVGIFFPMLVLRVLENVLQPSFVQKMT 410


>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
           family protein similar to C-terminal zinc-finger
           [Glycine max] GI:558543; contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 486

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 533 YTPGRFHFQHLSALGR-LPSAPNELPSQVMVGCPSFLLVAH 652
           Y P ++H QH S LG  + +APN     V    P   L++H
Sbjct: 61  YGPPQYHHQHASNLGSGMSTAPNFYVPYVNYEAPPSFLLSH 101


>At5g22250.1 68418.m02591 CCR4-NOT transcription complex protein,
           putative similar to SWISS-PROT:Q60809 CCR4-NOT
           transcription complex, subunit 7 (CCR4-associated factor
           1, (CAF1) [Mus musculus]
          Length = 278

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 709 RMRPAHSSFFIRWKYSSGIVCNQ*EAWTTHHN 614
           R     S  F     SSG++CN+  +W T H+
Sbjct: 138 RREGVESERFAELMMSSGLICNESVSWVTFHS 169


>At1g65190.1 68414.m07391 protein kinase family protein contains
           similarity to protein kinases
          Length = 396

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +2

Query: 245 SHCKLVHQFTSQCQW-SGTNE 304
           SH  LVHQ    CQW SG NE
Sbjct: 53  SHSNLVHQEEFYCQWYSGKNE 73


>At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,
           putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
           transcription complex, subunit 8 (CAF1-like protein,
           CALIFp) [Homo sapiens]
          Length = 280

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 691 SSFFIRWKYSSGIVCNQ*EAWTTHHN 614
           S  F     SSG+VCN+  +W T H+
Sbjct: 146 SERFAELMMSSGLVCNEEVSWVTFHS 171


>At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family
           protein low similarity to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 349

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 477 H*EHLTLILRGGTSWKFYQG 418
           H E +T+ L GG SW FYQG
Sbjct: 26  HVEDITIELEGGASW-FYQG 44


>At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family
           protein low similarity to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 488

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 477 H*EHLTLILRGGTSWKFYQG 418
           H E +T+ L GG SW FYQG
Sbjct: 165 HVEDITIELEGGASW-FYQG 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,799,578
Number of Sequences: 28952
Number of extensions: 402992
Number of successful extensions: 949
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)