Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10j02
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)                  81   6e-16
SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.12 
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            33   0.22 
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)            30   1.5  
SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)                     29   3.6  
SB_15057| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  

>SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 445

 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 34/49 (69%), Positives = 40/49 (81%)
 Frame = +1

Query: 535 RLVGPNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTT 681
           RL+GPNCPG+I P +CKIGIMP  +H  G +G+VSRSGTLTYEA  QTT
Sbjct: 14  RLIGPNCPGVITPGECKIGIMPGHIHLPGKVGIVSRSGTLTYEAVKQTT 62


>SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +1

Query: 631 VVSRSGTLTYEACHQTT 681
           +VSRSGTLTYEA HQT+
Sbjct: 2   IVSRSGTLTYEAVHQTS 18


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 555 SWYHCSREV*NWYHASCSAQTWLHRS 632
           +WYH S+   NWYH S +   W H S
Sbjct: 265 NWYHPSKTQANWYHPSKTQSNWNHPS 290



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 555 SWYHCSREV*NWYHASCSAQTWLHRS 632
           +WYH ++   NWYH S +   W H S
Sbjct: 255 NWYHPTKTQANWYHPSKTQANWYHPS 280



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 555 SWYHCSREV*NWYHASCSAQTWLHRS 632
           +WYH S+   NWYH + +   W H S
Sbjct: 465 NWYHPSKTQANWYHPTKTQANWYHPS 490



 Score = 31.9 bits (69), Expect = 0.50
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 555 SWYHCSREV*NWYHASCSAQTWLH 626
           +WYH ++   NWYH S +   W H
Sbjct: 475 NWYHPTKTQANWYHPSKTKANWYH 498



 Score = 31.5 bits (68), Expect = 0.67
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 555 SWYHCSREV*NWYHASCSAQTWLHRS 632
           +WYH ++   NWYH + +   W H S
Sbjct: 145 NWYHRTKTQANWYHPTKTQANWYHPS 170



 Score = 31.5 bits (68), Expect = 0.67
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 555 SWYHCSREV*NWYHASCSAQTWLHRS 632
           +WYH ++   NWYH + +   W H S
Sbjct: 245 NWYHPTKTQANWYHPTKTQANWYHPS 270



 Score = 31.1 bits (67), Expect = 0.88
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 555 SWYHCSREV*NWYHASCSAQTWLH 626
           +WYH S+   NWYH   +   W H
Sbjct: 485 NWYHPSKTKANWYHPIKTQSNWYH 508



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 555 SWYHCSREV*NWYHASCSAQTWLH 626
           +WYH ++   NWYH + +   W H
Sbjct: 505 NWYHPTKTQANWYHPTKTQANWYH 528



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 555 SWYHCSREV*NWYHASCSAQTWLH 626
           +WYH ++   NWYH + +   W H
Sbjct: 515 NWYHPTKTQANWYHPTKTQANWCH 538



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 555 SWYHCSREV*NWYHASCSAQTWLH 626
           +WYH  +   NWYH + +   W H
Sbjct: 495 NWYHPIKTQSNWYHPTKTQANWYH 518



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 555 SWYHCSREV*NWYHASCSAQTW 620
           +WYH S+   NWYH + +   W
Sbjct: 345 NWYHPSKTQVNWYHPTKTQANW 366


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 555 SWYHCSREV*NWYHASCSAQTWLHRS 632
           +WYH ++   NWYH S +   W H S
Sbjct: 500 NWYHPTKTQANWYHPSKTQSNWYHPS 525



 Score = 31.5 bits (68), Expect = 0.67
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 555 SWYHCSREV*NWYHASCSAQTWLHRS 632
           +WYH ++   NWYH + +   W H S
Sbjct: 490 NWYHPTKTQCNWYHPTKTQANWYHPS 515



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 555 SWYHCSREV*NWYHASCSAQTWLH 626
           +WYH ++   NWYH + +   W H
Sbjct: 480 NWYHPTKTQANWYHPTKTQCNWYH 503



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 555 SWYHCSREV*NWYHASCSAQTWLHRS 632
           +W H S+   NWYH   +   W H S
Sbjct: 390 NWNHPSKTQANWYHPPKTQSNWYHPS 415


>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = -3

Query: 588 NFTLLGSNDTRTVRTNQSRLVLSQEGMFYSHHIMLWHTFCNAHNEGHFSLNSF*NGC-CS 412
           NF+L    D       +  LV+ ++G     +       C     GHF L  + + C C+
Sbjct: 337 NFSLSLDPDQVVQWLTRGPLVIDEDGECLCGNFSTG-LLCKHCVPGHFFLQGYCSRCQCN 395

Query: 411 SRGRYINNRGSCSC 370
             G   + RG CSC
Sbjct: 396 GHGSICDERGKCSC 409


>SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)
          Length = 416

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 555 SWYHCSREV*NWYHASCSAQTW 620
           SWYHCS+      H  CSA +W
Sbjct: 215 SWYHCSKIPDKERHQFCSANSW 236


>SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)
          Length = 226

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 208 KVIVQGFTGKQGTFHSQQALDYGTKV-VGGVSPKK 309
           KV+V G TGK G    QQALD G  V V   SP+K
Sbjct: 9   KVVVFGGTGKTGLHVVQQALDRGHHVTVIARSPEK 43


>SB_15057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 648 PRTRYNSDATTFVHCSWHDTNFTLLGSNDTRTVRTNQ-SRLVLSQEGMF 505
           P+++YN D    V  S   T    +G +D+R  R  Q +R     EG F
Sbjct: 80  PKSQYNEDVREDVRSSGESTQLAGVGEDDSRQHRQAQAARQTQMDEGFF 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,650,022
Number of Sequences: 59808
Number of extensions: 501610
Number of successful extensions: 1332
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)