Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10j02
(689 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08300.1 68418.m00977 succinyl-CoA ligase [GDP-forming] alpha... 228 3e-60
At5g23250.1 68418.m02720 succinyl-CoA ligase [GDP-forming] alpha... 226 1e-59
At1g27660.1 68414.m03381 ethylene-responsive protein -related co... 28 6.7
At5g57140.1 68418.m08530 calcineurin-like phosphoesterase family... 27 8.9
At5g39390.1 68418.m04772 leucine-rich repeat family protein / pr... 27 8.9
At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containi... 27 8.9
At4g18240.1 68417.m02709 starch synthase-related protein contain... 27 8.9
At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein ... 27 8.9
At1g48840.1 68414.m05468 expressed protein contains Pfam profile... 27 8.9
At1g40129.1 68414.m04766 hypothetical protein 27 8.9
>At5g08300.1 68418.m00977 succinyl-CoA ligase [GDP-forming]
alpha-chain, mitochondrial, putative / succinyl-CoA
synthetase, alpha chain, putative / SCS-alpha, putative
identical to SP|P53586 Succinyl-CoA ligase [GDP-forming]
alpha-chain, mitochondrial precursor (EC 6.2.1.4)
(Succinyl-CoA synthetase, alpha chain) (SCS-alpha)
{Arabidopsis thaliana}; strong similarity to SP|P13086
Succinyl-CoA ligase [GDP-forming] alpha-chain,
mitochondrial precursor {Rattus norvegicus}; contains
Pfam profiles PF00549: CoA-ligase, PF02629: CoA binding
domain
Length = 347
Score = 228 bits (557), Expect = 3e-60
Identities = 106/165 (64%), Positives = 125/165 (75%)
Frame = +1
Query: 187 LILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFGTVKEAKA 366
+ + T+V+ QG TGK GTFH++QA++YGTK+V GV+PKK GTEHLG PVF +V EAKA
Sbjct: 52 VFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNSVAEAKA 111
Query: 367 GTGATASVIYVPPPGXXXXXXXXXXXXMPLIVCITEGVPQHDMVRVKHALLRQNKSRLVG 546
T A ASVIYVP P + LIVCITEG+PQHDMVRVKHAL Q+K+RL+G
Sbjct: 112 DTKANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMVRVKHALNSQSKTRLIG 171
Query: 547 PNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTT 681
PNCPGII P +CKIGIMP +HK G IG+VSRSGTLTYEA QTT
Sbjct: 172 PNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTT 216
>At5g23250.1 68418.m02720 succinyl-CoA ligase [GDP-forming]
alpha-chain, mitochondrial, putative / succinyl-CoA
synthetase, alpha chain, putative / SCS-alpha, putative
similar to SP|P36967 Succinyl-CoA ligase [GDP-forming]
alpha-chain, mitochondrial precursor (EC 6.2.1.4)
(Succinyl-CoA synthetase, alpha chain) (SCS-alpha)
{Dictyostelium discoideum}; contains Pfam profiles
PF00549: CoA-ligase, PF02629: CoA binding domain
Length = 341
Score = 226 bits (552), Expect = 1e-59
Identities = 107/165 (64%), Positives = 124/165 (75%)
Frame = +1
Query: 187 LILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFGTVKEAKA 366
+ + T+VI QG TGK GTFH++QA++YGTK+V GV+PKK GTEHLG PVF TV EAKA
Sbjct: 47 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNTVAEAKA 106
Query: 367 GTGATASVIYVPPPGXXXXXXXXXXXXMPLIVCITEGVPQHDMVRVKHALLRQNKSRLVG 546
T A ASVIYVP P + LIVCITEG+PQHDMVRVK AL Q+K+RL+G
Sbjct: 107 ETKANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRVKAALNSQSKTRLIG 166
Query: 547 PNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTT 681
PNCPGII P +CKIGIMP +HK G IG+VSRSGTLTYEA QTT
Sbjct: 167 PNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTT 211
>At1g27660.1 68414.m03381 ethylene-responsive protein -related
contains similarity to ethylene-inducible ER33 protein
[Lycopersicon esculentum] gi|5669656|gb|AAD46413
Length = 453
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = -3
Query: 393 NNRGSCSCACLCLFDCTKHRLTKMFCTSLLW*HSSNNFSTIVKGLLAVEGTLLSSETLNN 214
NN + + C+ L H L + L W H +++ +GLL ++ LSS T+++
Sbjct: 70 NNNNNNTSECMSLSSIHNHSLIQQQDFPLQWPHDQSSYQH-HEGLLKIKEE-LSSSTISD 127
Query: 213 H 211
H
Sbjct: 128 H 128
>At5g57140.1 68418.m08530 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 Calcineurin-like
phosphoesterase
Length = 397
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 102 PDWHSHCRIIECKSTKGKN 46
P+WH R+IE K KG++
Sbjct: 343 PNWHRRARVIEAKLGKGRD 361
>At5g39390.1 68418.m04772 leucine-rich repeat family protein /
protein kinase family protein contains Pfam PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain
Length = 502
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 291 SNNFSTIVKGLLAVEGTLLSSETLN 217
S NFS + KGLL +E L++ + LN
Sbjct: 217 SGNFSDVFKGLLGLEEKLVAVKVLN 241
>At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 534
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 114 LRKNPDWHSHCRIIECKSTKG 52
LR PD SHCR+IE + G
Sbjct: 97 LRFEPDLKSHCRVIEVAAESG 117
>At4g18240.1 68417.m02709 starch synthase-related protein contains
similarity to starch synthase GI:4582783 from [Vigna
unguiculata]
Length = 1040
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 451 PLIVCITEGVPQHDMVRVKHALLR 522
PL+ CIT VPQ + ++HA+ R
Sbjct: 842 PLVGCITRLVPQKGVHLIRHAIYR 865
>At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 565
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 426 NGCCSSRGRYINNRGSCSCACLCLFDCTK 340
+GCCS+ GR+I C CL + DC +
Sbjct: 109 SGCCSAIGRFI-------CGCLVIQDCRR 130
>At1g48840.1 68414.m05468 expressed protein contains Pfam profile:
PF04842 plant protein of unknown function (DUF639)
Length = 691
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 199 SETKVIVQGFTGKQGTFHSQQALDYGTK---VVGGVSPKKAGTEHLGKPVFGTV 351
S ++V+ + K+GT HS A D ++ V G SPK + +G+ + G V
Sbjct: 402 SSSRVLDRTAKAKEGTLHSISASDMVSQLGLVFGATSPKSRSSLVVGEVMVGDV 455
>At1g40129.1 68414.m04766 hypothetical protein
Length = 567
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -1
Query: 329 PRCSVPAFFGDTPPTTLVP-*SRACWLWK 246
PR FF D PP +P +R C LW+
Sbjct: 329 PRAECNIFFKDKPPDATLPFKTRGCTLWR 357
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,529,895
Number of Sequences: 28952
Number of extensions: 336862
Number of successful extensions: 813
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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