Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10i12
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...   103   1e-23
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    48   7e-07
SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha...    37   0.002
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    28   1.0  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    27   1.8  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   2.3  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    26   3.1  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    25   5.4  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    25   7.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.1  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    25   9.4  

>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score =  103 bits (248), Expect = 1e-23
 Identities = 40/78 (51%), Positives = 62/78 (79%)
 Frame = +3

Query: 168 QKEELMDQVKQQIAIANAQELLTKMTEKCFKKCINKPGTSLDSSEQKCIAMCMDRYMDSW 347
           +K   M Q++Q++A+A A EL++K+ E CF KCI +PG++ D +E+ C++ CM+RYMD+W
Sbjct: 17  KKSIFMKQIRQELAVAQAGELISKINENCFDKCIPEPGSTFDPNEKSCVSKCMERYMDAW 76

Query: 348 NLVSRTYSSRIQRERNNM 401
           N+VSRTY SR+QRE+ N+
Sbjct: 77  NIVSRTYISRMQREQKNL 94


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 48.4 bits (110), Expect = 7e-07
 Identities = 20/70 (28%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
 Frame = +3

Query: 156 LSGAQKEELMDQVKQQIAIANAQELLTKMTEKCFKKCINKPGTSLDSSEQKCIAMCMDRY 335
           LS +++ EL   ++ +      Q+ + + T  C+ KCI   G  LD SE++C+  C++R+
Sbjct: 12  LSESEQLELSKFIESEQQKVKLQQAIHQFTSTCWPKCIGNIGNKLDKSEEQCLQNCVERF 71

Query: 336 MD-SWNLVSR 362
           +D +++++ R
Sbjct: 72  LDCNFHIIKR 81


>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
           Tim9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 84

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 168 QKEELMDQVKQQIAIANAQELLTKMTEKCFKKCINK-PGTSLDSSEQKCIAMCMDRYMDS 344
           +++E + QV +   +     + + +T+ CF  C+     + L + E +CIA C D+++  
Sbjct: 7   KEQEHLTQVLEAKQLKEYLNMYSTLTQNCFSDCVQDFTSSKLSNKESECIAKCADKFLKH 66

Query: 345 WNLVSRTYS 371
              V + ++
Sbjct: 67  SERVGQRFA 75


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 512 PFIFTLTKPAASIK--VYETTTVYIYIKVFTPEVVFTALHVVSLALNSTAV 366
           P + T T P A++   V ETTT  +   + TP VV T   +V   +  T V
Sbjct: 257 PTVETTTLPTAAMTTPVEETTTTPMVETMITPTVVTTTTPMVETMITPTVV 307


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 231 LTKMTEKCFKKCINKPGTSLDSSEQKCIAMCMDRYMDSWNLVSRTYSSRIQ-RER 392
           L    E+ +K    K G   DS + K   MC+++ + +  ++ R Y      RER
Sbjct: 334 LVSSNEELWKSLFLKDGFFWDSIDSKIRTMCLEQSLSACAIMKRVYFRHFNLRER 388


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = -2

Query: 501 HINKTSGIDKSL*NYYSLYLHQSF----YSRSSVYSLTCCFSR 385
           H+N TSG+D +L  Y +++    +    ++ ++VY+ +C + R
Sbjct: 193 HLNDTSGVDFNLNEYNAMWKTSEYRYVDFNFTNVYNTSCEYPR 235


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 274 SQVLLWIAPNRSA*LCVWIGTWIHGISYRG 363
           S  LL +A +    LC  +  W HG+S RG
Sbjct: 41  SPALLSLAQSFMTVLCGLLWNWFHGVSARG 70


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
 Frame = +1

Query: 286 LWIAPNRSA*LCVWIG--TWIHG 348
           LW   NRS   CVW G   WI G
Sbjct: 134 LWPILNRSVLACVWYGVQAWIGG 156


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 522 NLKSFYFHINKTSGIDKSL*NYYS 451
           N+KS  FHI KT GI+     Y S
Sbjct: 268 NIKSAIFHIYKTEGINGFFRGYSS 291


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = +3

Query: 111  VNKNNNIMDALSTGTLSGAQKEELMDQVKQQIAIANAQELLTKMTEKCFKKCINKPGTSL 290
            V   N+++D   T TLS  ++  L   VK      +   L      +C   CI+    ++
Sbjct: 2258 VEAMNSLLDDNKTLTLSNGERIALQPYVKIFFEADSVASLTRATISRCGLICISNIDDNI 2317

Query: 291  DSSEQKCIA 317
             SS  K ++
Sbjct: 2318 LSSTDKMLS 2326


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +3

Query: 225 ELLTKMTEKCFKKCINKPG--TSL--DSSEQKCIAMCMDRYMDSWNLVS 359
           +LL+ M  + + K  N  G  TSL  D S + C+A C D  +  +N +S
Sbjct: 9   DLLSSMQPRKWLKNQNFVGEITSLSFDDSGELCLASCTDDTLQLYNCIS 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,585
Number of Sequences: 5004
Number of extensions: 38411
Number of successful extensions: 109
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)