Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10i12
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0323 - 27928385-27928534,27930326-27930430 85 3e-17
04_04_0910 - 29321128-29321276,29321977-29322508,29323301-293237... 44 8e-05
12_01_0183 - 1350451-1350477,1350887-1350969,1350977-1352696,135... 42 4e-04
08_02_1396 - 26742694-26742915,26743736-26743771 42 4e-04
11_01_0184 - 1444246-1444434,1446291-1446719 40 0.001
12_02_0836 + 23550376-23550470,23551617-23551803 39 0.002
10_08_0113 - 14896341-14897153 30 1.0
07_01_0952 - 8005633-8005687,8006357-8006395,8006668-8006720,800... 30 1.3
05_05_0145 - 22690212-22690472,22690701-22690818,22691125-226912... 30 1.3
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309... 30 1.3
07_03_0106 - 13460882-13462086,13463452-13463629 29 2.4
04_03_0384 - 15196416-15196760 29 3.1
05_05_0138 + 22644263-22644460,22644617-22644711,22645786-226459... 28 4.1
05_01_0085 - 568015-568204,568286-568365 28 4.1
05_04_0311 - 20120172-20122115 28 5.4
>02_05_0323 - 27928385-27928534,27930326-27930430
Length = 84
Score = 85.0 bits (201), Expect = 3e-17
Identities = 39/81 (48%), Positives = 53/81 (65%)
Frame = +3
Query: 132 MDALSTGTLSGAQKEELMDQVKQQIAIANAQELLTKMTEKCFKKCINKPGTSLDSSEQKC 311
MD+ S+ + S E LMDQ+K Q+A A AQE L + KCF KC+ KPG+SL SE C
Sbjct: 1 MDSFSSSSGSPPNTEALMDQIKAQLAQAYAQEFLETVGNKCFAKCVTKPGSSLSGSESSC 60
Query: 312 IAMCMDRYMDSWNLVSRTYSS 374
I+ C+DRY+++ +VSR S
Sbjct: 61 ISRCVDRYIEATGIVSRALFS 81
>04_04_0910 -
29321128-29321276,29321977-29322508,29323301-29323706,
29323933-29324028,29324563-29324645,29326620-29326732,
29327156-29327315
Length = 512
Score = 44.0 bits (99), Expect = 8e-05
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +3
Query: 201 QIAIANAQELLTKMTEKCFKKCINKPGTSLDSSEQKCIAMCMDRYMDSWNLVSRTYSSRI 380
++AIA L T + KCF KC+ KPGTSL SE CI+ Y+ ++T +++
Sbjct: 81 RVAIAPFDHLET-VGNKCFAKCVTKPGTSLSGSESSCISR---SYLLREIFATQTQFTKV 136
Query: 381 QRE 389
+RE
Sbjct: 137 ERE 139
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +3
Query: 132 MDALSTGTLSG--AQKEELMDQVKQQIAIANAQELL 233
MD+ S+ + +G A E LM+Q+K Q+A A AQE L
Sbjct: 1 MDSFSSPSSAGSTASTEHLMEQIKAQLAQAYAQEFL 36
>12_01_0183 -
1350451-1350477,1350887-1350969,1350977-1352696,
1354258-1354428,1355892-1355939
Length = 682
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 141 LSTGTLSGAQKEELMDQVKQQIAIANAQELLTKMTEKCFKKCI-NKPGTSLDSSEQKCIA 317
+ LS + + ++++ K++ A A E + K+T+ C+ KCI G+S +SE C++
Sbjct: 1 MDASALSNPRLQAMLEEEKRK---AMANEFVAKLTDVCWDKCITGSIGSSFSNSEASCLS 57
Query: 318 MCMDRYMD 341
C R+++
Sbjct: 58 NCAKRFLE 65
>08_02_1396 - 26742694-26742915,26743736-26743771
Length = 85
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 192 VKQQIAIANAQELLTKMTEKCFKKCI-NKPGTSLDSSEQKCIAMCMDRYMDSWNLVSRTY 368
++Q+ A E++ K+T C+ KCI + PG+ S E C+ C R++D ++++ +
Sbjct: 23 LQQEQQKAMVSEMVGKLTSVCWDKCITSTPGSKFSSGETTCLTNCAQRFLDMSVIIAKRF 82
>11_01_0184 - 1444246-1444434,1446291-1446719
Length = 205
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 213 ANAQELLTKMTEKCFKKCI-NKPGTSLDSSEQKCIAMCMDRYMDSWNLVSRTYSS 374
A A E + K+T+ C+ KCI G+S +SE C++ C R+ + L+ + SS
Sbjct: 149 AMANEFVAKLTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFFELKMLIVQRVSS 203
>12_02_0836 + 23550376-23550470,23551617-23551803
Length = 93
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 132 MDALSTGTLSGAQKEELMDQVKQ--QIAIANAQELLTKMTEKCFKKCINK-PGTSLDSSE 302
MD G L G +E+ M Q+ I ++ + + E+CF C++ +LD E
Sbjct: 1 MDKSMLGDLDGLPEEDKMRMAAMVDQLQIRDSLRMYNSLVERCFTDCVDTFRRKTLDKQE 60
Query: 303 QKCIAMCMDRYM 338
+ C+ C ++++
Sbjct: 61 ESCVRRCAEKFL 72
>10_08_0113 - 14896341-14897153
Length = 270
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +3
Query: 123 NNIMDALSTGTLSGAQKEELMDQVKQQIAIANAQELLTKMTEKCFK 260
++I+ L + +LSG Q++ ++D+ +QQ+A + T T C K
Sbjct: 21 SSILSLLPSPSLSGKQQQHVVDEQQQQVAGNSTDRAPTPFTVVCTK 66
>07_01_0952 -
8005633-8005687,8006357-8006395,8006668-8006720,
8007868-8007930
Length = 69
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Frame = +3
Query: 168 QKEELMDQVKQQIAIANAQ-----ELLTKMTEKCFKKCINK 275
QKE++ Q +Q +A + +L ++T+ CF KCI K
Sbjct: 11 QKEQVNMQKEQMFGLAEKEMEYRVDLFNRLTQTCFSKCIEK 51
>05_05_0145 -
22690212-22690472,22690701-22690818,22691125-22691261,
22691743-22691844,22691921-22692001,22692325-22692394,
22692628-22692689,22692908-22693320,22693424-22693507,
22694180-22694272,22694376-22694427,22694542-22694608,
22694714-22694772,22694920-22695033,22695174-22695347,
22695444-22695935,22696021-22696090,22696649-22696692
Length = 830
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 143 INWDAQWRAKRR-IDGSSKTTDRHSERSRTLNKND*KMFQ 259
++W + + K+ +D S+K TD H +R N ND K +
Sbjct: 737 LSWRDKNKGKQNNVDDSAKLTDAHDQREEITNNNDEKQVE 776
>05_04_0148 -
18426903-18427106,18430516-18430594,18430752-18430935,
18431020-18431063,18432028-18432165,18432713-18434511
Length = 815
Score = 29.9 bits (64), Expect = 1.3
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 244 LKNVSKSASISQVLLWIAPN---RSA*LCVWIGTWIHG-ISYRGHTAVEFNARETTCKA 408
L NVS +AS SQ+L + P+ +S L + G G I+ R H V N R T +A
Sbjct: 85 LNNVSFTASSSQILAVVGPSGAGKSTLLRILSGRGTGGEIAARPHAVVSVNGRAVTSRA 143
>07_03_0106 - 13460882-13462086,13463452-13463629
Length = 460
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 459 YYSLYLHQSFYSRSSVYSLTCCFSRVEF 376
Y+S+ + SFY+ SV +L C FS + F
Sbjct: 416 YFSVLPYMSFYTPGSVLNLACLFSCIFF 443
>04_03_0384 - 15196416-15196760
Length = 114
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 146 NWDAQWRAKRRIDGSSKTTDRHSERS 223
N DA WR RR SS T HS+++
Sbjct: 39 NSDASWRRSRRWSSSSGTAHTHSQKN 64
>05_05_0138 +
22644263-22644460,22644617-22644711,22645786-22645949,
22646725-22646970,22647600-22647944,22648516-22648586,
22648676-22648794,22650508-22650637,22650806-22650857,
22650974-22651136,22651244-22651418,22651772-22651942,
22652275-22652388,22652559-22652609
Length = 697
Score = 28.3 bits (60), Expect = 4.1
Identities = 8/30 (26%), Positives = 22/30 (73%)
Frame = +3
Query: 192 VKQQIAIANAQELLTKMTEKCFKKCINKPG 281
+++++ + +A+E++ MTE + KC+++ G
Sbjct: 576 LREEVTLEDAKEVIDIMTESLYDKCVDEHG 605
>05_01_0085 - 568015-568204,568286-568365
Length = 89
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +3
Query: 162 GAQKEE---LMDQVKQQIAIANAQELLTKMTEKCFKKCINK-PGTSLDSSEQKCIAMCMD 329
G ++EE M+ V ++ +A L ++ +CF C+ +L E+ C+ C+
Sbjct: 5 GGEEEEDKARMEAVADKLQTRDAIRLYNWVSHRCFSDCVTTFYRRTLGKKEEDCVRSCVR 64
Query: 330 RYM 338
+++
Sbjct: 65 KFL 67
>05_04_0311 - 20120172-20122115
Length = 647
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -1
Query: 367 YVLDTRFHESMYLSIHIAMHFCSELSKEVPGLLMHFLKHFSV 242
Y LD H+ L+ H ++H C ++ + +P ++ ++H SV
Sbjct: 493 YFLDNLMHD---LAQHASVHDCMKIDEGMPSVIPPTVRHLSV 531
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,437,731
Number of Sequences: 37544
Number of extensions: 204245
Number of successful extensions: 614
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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