Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10i12
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28)          54   1e-07
SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   1e-07
SB_7479| Best HMM Match : Vinculin (HMM E-Value=0)                     29   2.4  
SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_43855| Best HMM Match : PAN (HMM E-Value=0.0048)                    29   2.4  
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)                 29   3.2  
SB_3980| Best HMM Match : PAN (HMM E-Value=0.54)                       28   4.2  
SB_59559| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_8168| Best HMM Match : Oxidored_q4 (HMM E-Value=0.42)               28   5.5  
SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)                   28   5.5  
SB_56825| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   9.6  
SB_12219| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_36213| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.033)             27   9.6  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28)
          Length = 143

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 23/74 (31%), Positives = 45/74 (60%)
 Frame = +3

Query: 165 AQKEELMDQVKQQIAIANAQELLTKMTEKCFKKCINKPGTSLDSSEQKCIAMCMDRYMDS 344
           A ++ELM + ++    A  Q  + K T+ C+ KC++KPG  LD   + C+  C++R++D+
Sbjct: 69  ALRQELMIEEQK----AKFQMQVHKFTDTCWDKCMDKPGNKLDGKTETCLVNCVERFIDT 124

Query: 345 WNLVSRTYSSRIQR 386
             L+++ +   +QR
Sbjct: 125 TLLITKRFGELVQR 138


>SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 793

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 22/68 (32%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
 Frame = +3

Query: 156 LSGAQKEELMDQVKQ-QIAIANAQELLTKMTEKCFKKCINKPGTSLDSSEQKCIAMCMDR 332
           +S  Q +  + Q+ Q +   A  Q ++  +TE C++KC++KPG  LD   + C+A C++R
Sbjct: 1   MSSLQGDPQLQQMLQIEGEKAKFQTIVHSLTEMCWEKCVDKPGQKLDGKTETCLANCVNR 60

Query: 333 YMDSWNLV 356
           ++D+ N++
Sbjct: 61  FLDTSNML 68


>SB_7479| Best HMM Match : Vinculin (HMM E-Value=0)
          Length = 810

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = +3

Query: 123 NNIMDALSTGTLSGAQK--EELMDQVKQ-QIAIANAQELLTKMTEKCFKKCI 269
           NNI DAL    +SGA+K  + ++ +V+Q Q  + N     T++ EK  ++CI
Sbjct: 411 NNIGDALQHQNISGAKKPTDTIVGKVEQAQQWLNNPAGDHTRLGEKAIRQCI 462


>SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1098

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +3

Query: 129 IMDALSTGTLSGAQKEELMDQVKQQIAIANAQELLTKMTEKCFKKCINKPGTSLDSSEQK 308
           ++ A     +   + EE +++ KQ+ A+  A+E+  K  E   K  + K  T    ++QK
Sbjct: 803 VLKAYEDAQVHMKEMEEALEKTKQEYAVIEAEEVQLKNKEVDLKHEVEKYETVFKENQQK 862


>SB_43855| Best HMM Match : PAN (HMM E-Value=0.0048)
          Length = 111

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
 Frame = +3

Query: 198 QQIAIANAQELLTKMTEKCFKKCI-----------NKPGTSLDSSEQKCIAMCMDRYMDS 344
           +++AIANA + L K   +C KKCI           NKP T L  ++  C  +  D+Y  S
Sbjct: 39  KRLAIANATQHLVKRLGECTKKCILATKCVSFNFENKPSTGL--ADIICELLNTDKYFSS 96


>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
          Length = 921

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
 Frame = +3

Query: 123 NNIMDALSTGTLSGAQKEELMDQVKQQIAIANAQEL-LTKMT------EKCFKKCINKPG 281
           NN  + +S+ T+S       + +++   A++N + + LT++T      E  FK+ +N P 
Sbjct: 415 NNNYEVISSETVSSKNDSPGIPEIRDFSAVSNEKPVELTELTAGDETAEVIFKQGLNPPD 474

Query: 282 TSLDSSEQ 305
           ++L+  EQ
Sbjct: 475 SALEQEEQ 482


>SB_3980| Best HMM Match : PAN (HMM E-Value=0.54)
          Length = 200

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 198 QQIAIANAQELLTKMTEKCFKKCI 269
           +++AIANA + L K   +C KKCI
Sbjct: 138 KRLAIANATQHLVKRLGECTKKCI 161


>SB_59559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 402 TCCFSRVEFDCCMSSIRDSMNP 337
           TC FS V FDC  +S  ++ NP
Sbjct: 234 TCFFSFVGFDCIATSAEEAKNP 255


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +3

Query: 93   NLRIVAVNKNNNIMDALSTGTLSGAQKEELMDQVKQQIAIANAQELLTKM 242
            NL+    N N N  + +   T +   K+EL + +  Q ++ N ++++T++
Sbjct: 2667 NLQADGKNTNQNPTEVIKLHTDAQKTKQELTEAIGLQASVQNTKQIVTEL 2716


>SB_8168| Best HMM Match : Oxidored_q4 (HMM E-Value=0.42)
          Length = 268

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 402 TCCFSRVEFDCCMSSIRDSMNP 337
           TC FS V FDC  +S  ++ NP
Sbjct: 234 TCFFSFVGFDCIATSAEEAKNP 255


>SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)
          Length = 700

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +3

Query: 141 LSTGTLSGAQKEELMDQVKQQIAIANAQELLTKMTEKCFKKCINKPGTSLDSSEQKCIA- 317
           + +GT +     +L +Q+K  +++    + L    ++   K   +  T +    +KC+A 
Sbjct: 582 IDSGTAANIVSSKLYEQIKSNVSLMKTSKKLYAFGQEDALKLKGEFETEVSICSRKCVAT 641

Query: 318 -MCMDRYMDSWNLVSRTYSSRIQRERNN 398
               D      NL+S   + ++Q  R N
Sbjct: 642 LYVFDGNASVSNLISHNTAKKLQLLRVN 669


>SB_56825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +3

Query: 105 VAVNKNNNIMDALSTGTLSGAQKEELMDQVKQQIAIANAQELLTKMTEKCFKKCINKPGT 284
           +A  +  N+ +ALS GTL   Q ++  +Q     ++++   L     E+  K+  N  GT
Sbjct: 148 LAPQEQGNVGNALSDGTLQVIQSQK-TEQDAGIDSLSSGDALSMTSNERLLKEKKNLFGT 206

Query: 285 SLDSSEQK 308
           S D  + +
Sbjct: 207 SFDGKDDQ 214


>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 3312

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 225 ELLTKMTEKCFKKCINKPGT 284
           E L+  T KC  +CIN+PG+
Sbjct: 393 ECLSTSTNKCPGRCINRPGS 412


>SB_12219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 135 DALSTGTLSGAQKEEL-MDQVKQQIAIANAQELLTKMTEKCFKKCINKPGTSLDSSEQKC 311
           D+ +T   SG + ++  ++++K Q+A+       T +      + I  P T   S  +K 
Sbjct: 32  DSGTTADSSGNETDDSEVNELKAQVAVERRHRRKTIVNSFRLAELIPTPNTPYSSYRRKS 91

Query: 312 IAMCMDRYMDS 344
           IA+ +   +DS
Sbjct: 92  IALTVQSVIDS 102


>SB_36213| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.033)
          Length = 708

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = -3

Query: 485 AASIKVYETTTV--YIYIKVFTPEVVFTALHVVSLALNSTAVCPRYEIP*IHVPIHTHSY 312
           A + K Y++  +  Y++   F PEV+FT   V+ L + S  +  +  +  + +P+     
Sbjct: 255 AHNFKGYDSYFILKYLFTNGFKPEVIFTGGKVMYLNIKSLRIDMKCTLNFLQMPLSKLPK 314

Query: 311 ALLF-GAIQRSTW 276
           A  F   IQ+ T+
Sbjct: 315 AFGFDNVIQKGTF 327


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 497  LTKPAASIKVYETTTVYIYIKVFTPEVVFTALHVVSLALNSTA 369
            LT P  S   Y+T T+Y+ I +F P+      H++ + L   A
Sbjct: 1626 LTIPLRS--TYDTLTLYLRIALFAPKCCGRLTHIIMIPLLKVA 1666


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,930,067
Number of Sequences: 59808
Number of extensions: 265133
Number of successful extensions: 664
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)