Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10i12
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61570.1 68414.m06938 mitochondrial import inner membrane tra...    76   2e-14
At5g50810.1 68418.m06295 mitochondrial import inner membrane tra...    55   3e-08
At2g29530.1 68415.m03587 mitochondrial import inner membrane tra...    37   0.010
At3g46560.1 68416.m05054 mitochondrial import inner membrane tra...    36   0.017
At5g15730.1 68418.m01840 serine/threonine protein kinase, putati...    29   1.9  
At2g35075.1 68415.m04303 hypothetical protein                          29   2.6  
At5g09420.1 68418.m01091 chloroplast outer membrane translocon s...    27   5.9  
At5g47990.1 68418.m05929 cytochrome P450 family protein similar ...    27   7.9  

>At1g61570.1 68414.m06938 mitochondrial import inner membrane
           translocase (TIM13) identical to mitochondrial import
           inner membrane translocase subunit Tim13 [Arabidopsis
           thaliana] Swiss-Prot:Q9XH48; contains Pfam domain,
           PF02953: Tim10/DDP family zinc finger
          Length = 87

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 32/72 (44%), Positives = 49/72 (68%)
 Frame = +3

Query: 150 GTLSGAQKEELMDQVKQQIAIANAQELLTKMTEKCFKKCINKPGTSLDSSEQKCIAMCMD 329
           G+ S    E +M+ VK Q+A A A+EL+  +  KCF KC+ KPG+SL  SE  CI+ C++
Sbjct: 11  GSGSSVSPEVMMESVKTQLAQAYAEELIETLRTKCFDKCVTKPGSSLGGSESSCISRCVE 70

Query: 330 RYMDSWNLVSRT 365
           RYM++  ++SR+
Sbjct: 71  RYMEATAIISRS 82


>At5g50810.1 68418.m06295 mitochondrial import inner membrane
           translocase (TIM8) identical to mitochondrial import
           inner membrane translocase subunit Tim8 [Arabidopsis
           thaliana] Swiss-Prot:Q9XGY4; contains Pfam domain,
           PF02953: Tim10/DDP family zinc finger
          Length = 77

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = +3

Query: 159 SGAQKEELMDQVKQQIAIANAQELLTKMTEKCFKKCINK-PGTSLDSSEQKCIAMCMDRY 335
           S A   EL+  + Q+   A   E+++KMT  C+ KCI   PG+   SSE  C+  C  RY
Sbjct: 4   SMANNPELLQFLAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCAQRY 63

Query: 336 MDSWNLVSRTYSSR 377
           MD   ++ + ++S+
Sbjct: 64  MDMSMIIMKRFNSQ 77


>At2g29530.1 68415.m03587 mitochondrial import inner membrane
           translocase (TIM10) identical to mitochondrial import
           inner membrane translocase subunit Tim10 [Arabidopsis
           thaliana] Swiss-Prot:Q9ZW33; contains Pfam domain,
           PF02953: Tim10/DDP family zinc finger
          Length = 83

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +3

Query: 162 GAQKEELMDQVKQQIAIANAQELLTKMTEKCFKKCINK--PGTSLDSSEQKCIAMCMDRY 335
           G  KE+     + ++      EL  K+ + CF KC++K      L+  E  CI  C+ +Y
Sbjct: 8   GVTKEQAFSMAQTEMEYR--VELFNKLAQTCFNKCVDKRYKEAELNMGENSCIDRCVSKY 65

Query: 336 MDSWNLVSRTYSS 374
                +V +  S+
Sbjct: 66  WQVNGMVGQLLSA 78


>At3g46560.1 68416.m05054 mitochondrial import inner membrane
           translocase (TIM9) identical to mitochondrial import
           inner membrane translocase subunit Tim9 [Arabidopsis
           thaliana] Swiss-Prot:Q9XGX9; contains Pfam domain,
           PF02953: Tim10/DDP family zinc finger
          Length = 93

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +3

Query: 132 MDALSTGTLSGAQKEEL--MDQVKQQIAIANAQELLTKMTEKCFKKCINK-PGTSLDSSE 302
           MDA     L G  +E+   M  +  Q+ + ++  +   + E+CF  C++     SL   E
Sbjct: 1   MDASMMAGLDGLPEEDKAKMASMIDQLQLRDSLRMYNSLVERCFVDCVDSFTRKSLQKQE 60

Query: 303 QKCIAMCMDRYM 338
           + C+  C ++++
Sbjct: 61  ETCVMRCAEKFL 72


>At5g15730.1 68418.m01840 serine/threonine protein kinase, putative
           similar to protein-serine/threonine kinase [Nicotiana
           tabacum] gi|505146|dbj|BAA06538
          Length = 434

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +3

Query: 102 IVAVNKNNNIMDALSTGTLSGAQKEELMDQVKQQIAIANAQELLTKMTEKCFKKCINK 275
           I A++   N+M+ ++  ++S    +E++DQ     A      LL K+  +C  K   K
Sbjct: 305 ITAIHPQQNLMEYINLASMSPDGIDEILDQKLVGNASIEEVRLLAKIANRCVHKTPRK 362


>At2g35075.1 68415.m04303 hypothetical protein
          Length = 485

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -3

Query: 419 VVFTALHVVSLALNSTAVCPRYEIP*IHVPIHTHSYALLFGAIQRSTWLIDALFETFFS 243
           V   A H +SL L + A+    ++    +P    S ALL+ +++ S W +   F    S
Sbjct: 102 VSLDAGHAISLDLETAALKMSADLNRTEIPSSVSSKALLYESLKPSIWWVSYAFANLMS 160


>At5g09420.1 68418.m01091 chloroplast outer membrane translocon
           subunit, putative similar to component of chloroplast
           outer membrane translocon Toc64 [Pisum sativum]
           GI:7453538; contains Pfam profiles PF01425: Amidase,
           PF00515: TPR Domain
          Length = 603

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 432 FYSRSSVYSLTCCFSRVEFDCCMSSIRDSMNPCTY 328
           + +R++ +   CCF + E DC  + + D  N   Y
Sbjct: 525 YCNRAAAFLELCCFQQAEQDCTKAMLIDKKNVKAY 559


>At5g47990.1 68418.m05929 cytochrome P450 family protein similar to
           Cytochrome P450 93A3  (P450 CP5) (SP:O81973)  [Glycine
           max];
          Length = 511

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 414 VYSLTCCFSRVEFDCCMSSIRDSMNPCTYP 325
           ++ L C FSR+ +D      +DS   C  P
Sbjct: 14  IFLLLCLFSRLSYDLFFRKTKDSRAGCALP 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,772,895
Number of Sequences: 28952
Number of extensions: 181170
Number of successful extensions: 494
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)