Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10i08
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)                     27   9.0  
SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_23621| Best HMM Match : SURF2 (HMM E-Value=5)                       27   9.0  

>SB_39054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 803

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +2

Query: 185 PYLRWSKMKPKRSTRKSSIRLCCTQRGC*DRSPCRRSVVRDYAVSWPCPRF 337
           P   WS    +R  R+ S    C  R   DR+  R    R  A +W C +F
Sbjct: 439 PEWAWSGAAARRRIRQLSPYCLCFSRSQRDRTEIRLYRKRALAATWACEKF 489


>SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1404

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 329  PRFLKMKSLERFMQPSRNEVLKLTTRCMV 415
            PRF  ++++  F+   ++ VLKLT RC++
Sbjct: 1051 PRFFILENVRNFVSFKKSMVLKLTLRCLL 1079


>SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 475 QTEVRASNSEALRGFYLQRSYHTSRRELQNFIPARLH 365
           Q+ V A  ++ LRG  L R+YH   R +Q F   + H
Sbjct: 90  QSPVLAHLADTLRGIVLIRTYHMENRFIQRFNEVQDH 126


>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
          Length = 873

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 217 LRFHLRPAQVGRSTEASVFSGSR*RSCPCHGA--ISSGTCLCTVKKRFLVSRPF 62
           L FH    Q+G ST  S+ + S    CPC G+   SSG+   +       S  F
Sbjct: 693 LWFHSSCCQIGNSTYNSLANSSCTWICPCCGSSNFSSGSIFTSSSNSISTSNSF 746


>SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 103 NMCPTKSRRDMDTIVTDC 156
           N+CP+KS+  MD I  DC
Sbjct: 733 NICPSKSQTQMDGIDNDC 750


>SB_23621| Best HMM Match : SURF2 (HMM E-Value=5)
          Length = 403

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 95  CTQTCARRNRAVTWTRSLPTAREDR 169
           C  T  RRN  VTW + L  A EDR
Sbjct: 334 CVDTGRRRNSTVTW-KDLKAASEDR 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,548,831
Number of Sequences: 59808
Number of extensions: 326687
Number of successful extensions: 2969
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2968
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)