Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10i08
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07710.1 68415.m00998 hypothetical protein                          31   0.79 
At3g60320.1 68416.m06742 expressed protein contains Pfam profile...    29   2.4  
At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family...    27   7.4  

>At2g07710.1 68415.m00998 hypothetical protein
          Length = 150

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 513 QIVCRTQHLVHHSKLRSELRTQKL*GASTYREATIH 406
           Q++ R +H +HHS LRS  R       ST R ++ H
Sbjct: 19  QLITRPRHSIHHSTLRSSRRLTTSHNHSTPRSSSSH 54


>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
           PF04782: protein of unknown function (DUF632), PF04783:
           protein of unknown function (DUF630)
          Length = 796

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 76  LENVSSLYTNMCPTKSRRDMDTIVTDCPRRQKLRCSALPAL 198
           L N+SS +T+  P   +  +DT   D P   K  CS L  L
Sbjct: 407 LSNLSSTWTSKPPLAVKYRIDTTALDQPNSSKSLCSTLDRL 447


>At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 217

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 143 SLPTAREDRSFGAPPYLRWSKMKPKRSTRKSS 238
           +L  + ED S G+P   RWS  K   S+R+ S
Sbjct: 160 TLSPSEEDSSQGSPVSSRWSSPKSSFSSRRGS 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,225,117
Number of Sequences: 28952
Number of extensions: 202128
Number of successful extensions: 491
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)