Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10i07
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.8  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   9.8  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   9.8  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 138 DEDNKMSSENTKEEINEQVPINEKDNVNNKDEFENRS 248
           DE+   +  +  E + E+    E D+ NN ++ E  S
Sbjct: 436 DEETSTTVFSNVEVVQEEAKKEESDSNNNNNKEEGNS 472


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 519  LVIFMGAWSDRTGNR 563
            ++I +G W+D  GN+
Sbjct: 2394 VLIALGGWNDSAGNK 2408


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 684 GISLLGTLWFRLESHKRSKCSIHCSR 607
           G+   GTL F     K  K ++ C+R
Sbjct: 86  GVISKGTLLFMTSQLKPDKVTVFCNR 111


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 684 GISLLGTLWFRLESHKRSKCSIHCSR 607
           G+   GTL F     K  K ++ C+R
Sbjct: 86  GVISKGTLLFMTSQLKPDKVTVFCNR 111


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 684 GISLLGTLWFRLESHKRSKCSIHCSR 607
           G+   GTL F     K  K ++ C+R
Sbjct: 86  GVISKGTLLFMTSQLKPDKVTVFCNR 111


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 684 GISLLGTLWFRLESHKRSKCSIHCSR 607
           G+   GTL F     K  K ++ C+R
Sbjct: 86  GVISKGTLLFMTSQLKPDKVTVFCNR 111


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 455 PANNFTY*IMEDYYTDRHTHTSGYLHGS 538
           P+N FT  +++     RHT TS    G+
Sbjct: 265 PSNRFTRHLIQRRTHTRHTTTSHNTRGT 292


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 572 HTPPNLR*IYGLREQCIE 625
           +TPP L  +YG  EQ  E
Sbjct: 138 YTPPRLPTVYGKPEQNYE 155


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,538
Number of Sequences: 336
Number of extensions: 3823
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)