Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10i07
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 35 0.013
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 32 0.092
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 32 0.092
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.49
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 29 0.49
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 28 1.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 1.5
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa... 27 2.6
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 27 2.6
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 27 3.5
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 26 4.6
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 26 4.6
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 26 4.6
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 6.1
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 26 6.1
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 8.0
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 8.0
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz... 25 8.0
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 25 8.0
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 25 8.0
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 25 8.0
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 34.7 bits (76), Expect = 0.013
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +3
Query: 147 NKMSSENTKEEINEQVPINEKDNVNNKDEFENRSFFDKLCE----IKSNITVEPIFAGLI 314
NK SS T + N +P +N + FE+R FD++ E + ++ + + +
Sbjct: 319 NKSSSNGTPDRANSPIPSQLSENKLTLESFEHRKSFDQVREEAPLEEDSLEQQLLRDAFL 378
Query: 315 IPSTLARLAIQNLNLDKACRVKSQ 386
+ L +L+I+N+ + +KSQ
Sbjct: 379 LIRALCKLSIKNIPYEHEYDLKSQ 402
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 31.9 bits (69), Expect = 0.092
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 668 EHCGFDWNLIKEVSAQYIAHADHKFTEDWEEYANFSVARPVAPSSHEDNQKCGY 507
E CG ++N + E ++ + + F ++ EEYA + +PS HE+ C +
Sbjct: 70 EDCGTEYNEVVE-DDEFRSEDEDDFMDEEEEYALYEAELSSSPSIHEEVIDCNF 122
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 31.9 bits (69), Expect = 0.092
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 96 RDNVLVSVYFKLSRDEDNKMSS-ENTKEEINEQVPINEKDNVNNKDEFENRSFFDKLCEI 272
R +SVY K +RD NK++ E T E +N+Q+ EK + + E + K
Sbjct: 1673 RSKAKISVYEKKTRDLQNKITQLEETIENLNKQLSNPEKTDESTSSVTETKPVTSKPTAS 1732
Query: 273 KSNI 284
K+++
Sbjct: 1733 KADV 1736
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.5 bits (63), Expect = 0.49
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +3
Query: 123 FKLSRDED--NKMSSENTK-EEINEQVPINEKDNVNNKDEFENRSFFDKLCEIKSNITVE 293
F+LS DED +++ N K + +PI+E ++ NK E + +LCE + + +E
Sbjct: 4399 FELSEDEDIEDELPDYNVKITNLPAAMPIDEARDLWNKHEDSTKQLSIELCE-QLRLILE 4457
Query: 294 PIFA 305
P A
Sbjct: 4458 PTLA 4461
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 29.5 bits (63), Expect = 0.49
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Frame = +3
Query: 135 RDEDNKMSSENTKEEINEQVPI--NEKDNV------NNKDEFENRSFFDKLCEIKSNIT 287
RD+D+ SSE++ E++ + +PI K V ++FEN + D E +SN++
Sbjct: 45 RDDDSGGSSESSNEDMRDNIPIVSGRKKTVRLNRLQRESEQFENSALKDINVEYQSNLS 103
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +3
Query: 117 VYFKLSRDEDNKMSSENTKEEINEQVPINEKDNVNNKDEFENRSF 251
V + S DE++ + EN E NE++ +KD VN ++ ++N+ +
Sbjct: 72 VALESSSDEEDGNAEENLSE--NEELSGKKKDAVNEEELYDNKGW 114
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/92 (21%), Positives = 39/92 (42%)
Frame = +3
Query: 126 KLSRDEDNKMSSENTKEEINEQVPINEKDNVNNKDEFENRSFFDKLCEIKSNITVEPIFA 305
K DED+ E+ ++ P N NN++ ++ SF+ KL E +++
Sbjct: 479 KPKNDEDDSKVDESVAKD--STTPNELSKNANNENYDDDSSFYGKLAESVQEVSIADKKD 536
Query: 306 GLIIPSTLARLAIQNLNLDKACRVKSQFGDVV 401
I+ + ++ +L+K GDV+
Sbjct: 537 AEIVKDSFKIFNPEDSDLEKNITEALLTGDVL 568
>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 591 GEFMVCVSNVLSTYFFYEIPVETTMFLEAIFPAIT 695
GE+ C N +ST+ + +E TM E PA+T
Sbjct: 91 GEYEFCFDNHMSTFTDKIVTMEITMENELSLPALT 125
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 168 TKEEINEQVPINEKDNVNNKDEFENRSFFDKLCEI 272
T+ E N ++ NE+ +VN+ D + FF KL +I
Sbjct: 60 TENEENNEIETNEEMHVNSHDYAFPQEFFLKLLDI 94
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +3
Query: 141 EDNKMSSENTKEEINEQVPINEKDNVNNKDEFEN 242
+DN S K+ E +P +++DN+ D + +
Sbjct: 127 KDNHFFSHKQKKIQRESIPFHKRDNIETSDAYSS 160
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 417 ERKGNYTTQEAEIQQIISHIESWRTIIQTAIPT 515
E + T E E ++I + + SW+++I +PT
Sbjct: 286 EYRDKVATLELENEKIQTELNSWKSLITNELPT 318
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 4.6
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Frame = +3
Query: 432 YTTQEAEIQQIISHIESWR---TIIQTAIPTLLVIFMGAWSDRTGNRKICILLPIFGEFM 602
Y TQ + Q II +++ TI+ T L I + W D N K +++ + +
Sbjct: 130 YNTQISAAQFIIDMVKANPNEITIVAAGPMTNLAIALSIWPDLAKNTKSLVIMGGYVDSQ 189
Query: 603 VCVSNVLSTYFFYEIPVETTMFL--EAIFPAITGGW 704
++ V F ++ + +F+ EA AIT W
Sbjct: 190 --IAQVTGGDFLNDMYSDFNLFMEPEAAQTAITADW 223
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/38 (28%), Positives = 15/38 (39%)
Frame = -3
Query: 620 YIAHADHKFTEDWEEYANFSVARPVAPSSHEDNQKCGY 507
Y +H DW + N+S + P E N GY
Sbjct: 263 YFSHDISNVPRDWNKVTNYSKRLGIIPQDFEPNCTNGY 300
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 135 RDEDNKMSSENTKEEINEQVPINE--KDNVNNKDEFENRSFFDKLCEIKSNITVEPIFAG 308
++ED+++ SEN +++ +Q+ + E + + + + R F L E + ++P+
Sbjct: 422 QEEDHRLWSENVPKQVVDQIDVREWKRQEIIFEVIYTERDFVRDL-EYIRDFWIKPLSTS 480
Query: 309 LIIP 320
+IP
Sbjct: 481 NVIP 484
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +3
Query: 105 VLVSVYFKLSRDEDNKMSSENTKEEINEQVPINEKDNVNNK 227
V+ S F+ + D +EN E +E P N D+ K
Sbjct: 289 VVKSAVFREDKQNDENEKNENEPIEASESAPTNVSDSTEPK 329
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 626 AQYIAHADHKFTEDWEEYANFSVARPVAPSSHEDNQ 519
+Q+I D EDW EY N + AR SS + Q
Sbjct: 894 SQFIQQLD--ILEDWFEYKNIAYARFDGASSEMERQ 927
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 438 TQEAEIQQIISHIESWRTIIQTAIPTLLVIF 530
++E E++Q+ S ++ WR I A+ ++F
Sbjct: 103 SEEQEVEQLCSTLDVWRRRIPHALVAKCIVF 133
>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 265
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 159 SENTKEEINEQVPINEKDNVNNKDEFENRSFFDKLCEIKSNITVEPIF 302
+E+ E+ +NE NV+ + F N+ + SNIT IF
Sbjct: 42 TESLTEDSEFNYIVNESQNVSTRLIFWNKWIYILCANTSSNITATRIF 89
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 573 CKFFCCPSCRSKLP 532
C+ CP CRSKLP
Sbjct: 45 CQSRACPLCRSKLP 58
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 8.0
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 13/81 (16%)
Frame = +3
Query: 90 LTRDNVLVSVYFKLSRDEDN-----KMSSENTKEEINEQVPINEKD--------NVNNKD 230
L+ D V Y K S DE + ++SS E N ++PI KD +VNN +
Sbjct: 118 LSSDEESVLDYSKDSEDEQDYELRPRVSSSWNNESYN-RLPIKTKDGLLQNVVADVNNGE 176
Query: 231 EFENRSFFDKLCEIKSNITVE 293
EF + S + EI S+I E
Sbjct: 177 EFLSESESEASLEIDSDIKDE 197
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = +3
Query: 129 LSRDEDNKMSSENTKEEINEQVPINEKDNVNNKDEFENRSFFDKLCEIKSNITVEPIFAG 308
+ R + + N KEE E+ ++KD+ + ++ +N K E+ S++ G
Sbjct: 170 MKRKLETEKLEANNKEEKEEKEGKDDKDDKEDSNDTKNDKKISK-NEVDSSLIEASPLTG 228
Query: 309 LIIPSTLARLAI 344
+ P L +AI
Sbjct: 229 QVPPKFLDTIAI 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,069
Number of Sequences: 5004
Number of extensions: 63263
Number of successful extensions: 219
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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