Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10i05
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 34 0.044
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 33 0.13
03_06_0471 + 34169562-34169892,34170121-34170347 33 0.13
02_04_0382 - 22501041-22501279,22501717-22501810 33 0.13
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 0.95
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 1.3
01_01_0082 + 625198-625719 28 3.8
08_02_1289 - 25923916-25924586,25925148-25926630 27 5.1
04_03_0904 + 20717005-20718087 27 5.1
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 5.1
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 27 6.7
09_02_0417 - 8915604-8916779,8916863-8917270 27 6.7
10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016... 27 8.8
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 27 8.8
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 34.3 bits (75), Expect = 0.044
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2
Query: 110 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFKPTPFPGARG 268
Y P + P V PP Y P +G P N + Y +PP GRP P P GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448
>05_05_0156 + 22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 32.7 bits (71), Expect = 0.13
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -3
Query: 178 AVSIRVVIFGRINDVRAVVNRFVAVSLSVGHSQQSEDENHEEFHFYMITSYHRRK 14
A I +++G ++D ++F+ +S QS+DEN + H + +YH +K
Sbjct: 985 ACDIIRILYGEVHDHSPFDDKFLPLSFDAQIDSQSDDENDKSGHGRIKGNYHSKK 1039
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 32.7 bits (71), Expect = 0.13
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 110 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 259
Y P P PP Y P+ GY P GAY PP G +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 32.7 bits (71), Expect = 0.13
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +2
Query: 53 FFMIFVLALLAMAN-AQGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDP 217
F ++ A +A A +G P ++ + PP D P+ + Y+P + YY DP
Sbjct: 16 FALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DP 74
Query: 218 PQGRPYFKPTPFPGARGG 271
P Y+ P P P GG
Sbjct: 75 PPSPDYYDPPPSPYYGGG 92
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 0.95
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 128 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 244
+PY P P P G Y P G Y PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +2
Query: 98 QGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF 253
QG Y+P R PP+ P Y P G Y PQG+PY P P+
Sbjct: 246 QGETYQPQPQRE--TYPPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQPY 291
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +2
Query: 116 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 256
P + P IV P Y P+ YEP Y +PP PY P FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680
>01_01_0082 + 625198-625719
Length = 173
Score = 27.9 bits (59), Expect = 3.8
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 101 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF-PGARGG 271
G GY P + NP YNP +G+ N Y+ PP G Y + F P A G
Sbjct: 100 GGGYNPTPS----YNPTPGYNPTPSGWFTPPNMPSYLTPP-GTLYPQDPGFRPNAAAG 152
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -3
Query: 382 ALQYVYLFIPLT*I---HMKF*NILLIHYFVINFLRYSLLPTASTRERGRLEV 233
ALQY+Y +P+ + H+K NILL F YSL+P + +L V
Sbjct: 519 ALQYLYDELPMLTVPHGHLKSSNILLNDRFEPLLTDYSLVPVMNQSHSAQLMV 571
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 143 NPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 256
NPP Y P Y+P PP +P KPTP P
Sbjct: 237 NPPPTYKPAPPTYKPQPKPN---PPPTYKPQPKPTPTP 271
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +1
Query: 196 RCILRGPSPR-PTLLQAYPFPWCSRW 270
+ I+ PSP P + A F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 20 PVITRDHIKMKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 187
PV + + FMI+ ++L + N G P+D+ Y+ + P DY Y+P
Sbjct: 474 PVYLKAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYL-DLPVDYMDLFKLYDP 528
>09_02_0417 - 8915604-8916779,8916863-8917270
Length = 527
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 131 PYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 250
PY +N P P+ Y P Y PPQ PY P P
Sbjct: 42 PYAMNFPFPPFPH---YPPYTQNLQYAVPPQYAPYTLPPP 78
>10_08_0493 +
18299885-18299892,18300201-18300837,18301254-18301676,
18301769-18302014,18302124-18302789,18303228-18303283,
18303367-18303460,18303559-18303738
Length = 769
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = +2
Query: 110 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 244
+ P D P + P +++ G G DPP GRP P
Sbjct: 474 FAPFDGPPVDILPNREFMLYGRSANSPPYGGPPNDPPYGRPAIDP 518
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 169 WKRLRTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 288
W RLR R +L+ P+P P + + RW K +L
Sbjct: 836 WDRLRENSFRILLQFPTPLPGISSSTSIDSVIRWAKKLVL 875
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,566,922
Number of Sequences: 37544
Number of extensions: 253306
Number of successful extensions: 720
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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