BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmmt10i05 (441 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_42229| Best HMM Match : Na_H_Exchanger (HMM E-Value=3.9) 31 0.32 SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3) 31 0.32 SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56 SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29) 30 0.97 SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2 SB_51592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2 SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37) 29 2.2 SB_56515| Best HMM Match : Ribosomal_L30 (HMM E-Value=5.6) 28 3.0 SB_50455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0 SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 28 3.0 SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0 SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0 SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 28 3.0 SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9 SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9 SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2 SB_51906| Best HMM Match : DUF1621 (HMM E-Value=0.22) 27 5.2 SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 27 6.9 SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024) 27 6.9 SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9 SB_27578| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1 >SB_42229| Best HMM Match : Na_H_Exchanger (HMM E-Value=3.9) Length = 678 Score = 31.5 bits (68), Expect = 0.32 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = +3 Query: 90 PTLKETATNLLTTARTSLILPKITT--LMETATNLSTTVHITWTLPKADLTSSLPLSLVL 263 P + T L T T+L L ITT L+ T + V IT TLP +T+ LPL ++ Sbjct: 272 PLVAITTILHLVTITTTLPLVVITTILLLVVITTILPLVAITTTLPLVAITTILPLVVIT 331 Query: 264 AV 269 + Sbjct: 332 TI 333 Score = 29.5 bits (63), Expect = 1.3 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Frame = +3 Query: 90 PTLKETATNLLTTARTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVL 263 P + T T L T L L ITT++ T + V IT TLP +T+ LPL + Sbjct: 614 PLVVITTTLPLVVITTILPLVAITTILPLVAITTILPLVVITTTLPLVTITTILPLVAIT 673 Query: 264 AV 269 + Sbjct: 674 TI 675 Score = 27.5 bits (58), Expect = 5.2 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Frame = +3 Query: 111 TNLLTTARTSLILP--KITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVLAV 269 T +L + ILP ITT++ T + V IT TLP +T+ LPL ++ + Sbjct: 79 TTILPLVDITTILPLVAITTILPLVVITTILPLVVITTTLPLVAITTILPLVVITTI 135 Score = 27.5 bits (58), Expect = 5.2 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Frame = +3 Query: 90 PTLKETATNLLTTARTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVL 263 P + T L T L L ITT++ T + V IT TLP +T+ LPL ++ Sbjct: 470 PLVAITTILPLVVITTILPLVVITTILPLVVITTILPLVVITTTLPLVAITTILPLVVIT 529 Query: 264 AV 269 + Sbjct: 530 TI 531 Score = 27.1 bits (57), Expect = 6.9 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Frame = +3 Query: 90 PTLKETATNLLTTARTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVL 263 P + T L T L L ITT++ T + V IT TLP +T+ LPL + Sbjct: 515 PLVAITTILPLVVITTILPLVVITTILHLVAITTILPLVAITTTLPLVVITTILPLVAIT 574 Query: 264 AV 269 + Sbjct: 575 TI 576 >SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3) Length = 1165 Score = 31.5 bits (68), Expect = 0.32 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Frame = +3 Query: 105 TATNLLTTARTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVLAV 269 T T L T L L ITTL+ T + V IT TLP +T++LPL ++ + Sbjct: 541 TTTLPLVVITTILPLVTITTLLPLVVITTILPLVVITTTLPLVAITTTLPLVIITTI 597 Score = 28.7 bits (61), Expect = 2.2 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = +3 Query: 96 LKETATNLLTTARTSLILPKITTLMETATNLSTTVH---ITWTLPKADLTSSLPL 251 L + + +L L ITT++ T ++TT+H IT TLP +T+ LPL Sbjct: 502 LNHASKKAILAITNTLPLVVITTILHLVT-ITTTLHLVTITTTLPLVVITTILPL 555 Score = 27.1 bits (57), Expect = 6.9 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = +3 Query: 120 LTTARTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVLAV 269 L T L L ITT++ T + V IT TLP +T+ LPL + + Sbjct: 645 LVVITTILPLVVITTILHLVAITTILPLVVITTTLPLVTITTILPLVAITTI 696 Score = 26.6 bits (56), Expect = 9.1 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = +3 Query: 120 LTTARTSLILPKITTLMETATNLSTT--VHITWTLPKADLTSSLPL 251 L T T L L ITT++ +T V IT TLP +T+ LPL Sbjct: 555 LVTITTLLPLVVITTILPLVVITTTLPLVAITTTLPLVIITTILPL 600 >SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 290 Score = 30.7 bits (66), Expect = 0.56 Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 3/52 (5%) Frame = +2 Query: 110 YEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAY--YVDPPQGRPYFKPTPFP 256 Y P N PY P Y P N Y P N Y +PP P + P P P Sbjct: 116 YPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNP 167 Score = 28.3 bits (60), Expect = 3.0 Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 5/54 (9%) Frame = +2 Query: 110 YEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAY----YVDPPQGRPYFKPTPFP 256 Y P N PY P Y P+ N Y P N Y Y PP P P P P Sbjct: 124 YPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPP 177 Score = 27.1 bits (57), Expect = 6.9 Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 1/50 (2%) Frame = +2 Query: 110 YEPIDNRPYIVNPPKDYNPNGN-GYEPIDNGAYYVDPPQGRPYFKPTPFP 256 Y P N PY P Y P N Y P N Y PP + P P P Sbjct: 108 YPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPY---PPSPNAPYPPPPNP 154 Score = 27.1 bits (57), Expect = 6.9 Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%) Frame = +2 Query: 110 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG-RPYFKPTP 250 Y P N PY P Y P N P Y PP P + P P Sbjct: 179 YPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPNPPYPPPP 226 >SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29) Length = 447 Score = 29.9 bits (64), Expect = 0.97 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = +2 Query: 104 NGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPG 259 NG P + P+ PP Y P NG +P+ Y+ P G+P + PF G Sbjct: 314 NGQPPYNTPPFNGQPPY-YTPPFNG-QPL----YHTPPFNGQPPYNTPPFNG 359 Score = 29.1 bits (62), Expect = 1.7 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Frame = +2 Query: 107 GYEPIDNRPYIVNPPKDYN-PNGNGYEPID----NG--AYYVDPPQGRPYFKPTPFPG 259 G P + P+ PP YN P NG P + NG YY P G+P + PF G Sbjct: 293 GQPPYNAPPFTGQPP--YNAPPFNGQPPYNTPPFNGQPPYYTPPFNGQPLYHTPPFNG 348 >SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1506 Score = 28.7 bits (61), Expect = 2.2 Identities = 19/66 (28%), Positives = 35/66 (53%) Frame = +3 Query: 105 TATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAVGSKEY 284 T TN+ TT T++ ITT + T T ++TT IT T+ +T+++ +++ + Sbjct: 1063 TITNITTTINTTINTTIITTTI-TTTIITTT--ITTTIITTTITTTITTTIITTTVTTTI 1119 Query: 285 LRKLIT 302 + IT Sbjct: 1120 ITTTIT 1125 >SB_51592| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 200 Score = 28.7 bits (61), Expect = 2.2 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Frame = +3 Query: 105 TATNLLTTARTSLILPKITTLMETATNLSTTVH--ITWTLPKADLTSSLPLSLV 260 T + ++TT + +I ITT+ + T L+TT+ I LP TS PL ++ Sbjct: 20 TISQIITTL-SRIITDPITTISQIITTLATTISQIIRTPLPIITTTSRTPLRII 72 >SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37) Length = 352 Score = 28.7 bits (61), Expect = 2.2 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +3 Query: 105 TATNLLTTARTSLILPKITTLMETATNLSTTVHITWTL 218 T TN++TTA T+ I+T+ T T +T + I T+ Sbjct: 297 TNTNIITTATTTTTSTTISTITVTITTTTTIIIIVITI 334 >SB_56515| Best HMM Match : Ribosomal_L30 (HMM E-Value=5.6) Length = 183 Score = 28.3 bits (60), Expect = 3.0 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +3 Query: 78 CWLWPTLKETATNLLTTARTSLILPKITTLMETAT 182 CW++PT+ ++A + + RT L L +I L AT Sbjct: 129 CWIFPTVGKSAEEITSILRT-LFLRRIPLLFSKAT 162 >SB_50455| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 89 Score = 28.3 bits (60), Expect = 3.0 Identities = 15/56 (26%), Positives = 30/56 (53%) Frame = +3 Query: 93 TLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLV 260 T+ AT + T T++I TT+ T T ++TT+ T T +T+++ +++ Sbjct: 12 TIITNATTTIITLSTTIITTT-TTITTTTTTITTTITPTITTTTTIITTTITTTII 66 >SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) Length = 839 Score = 28.3 bits (60), Expect = 3.0 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +3 Query: 123 TTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSS 242 T A + + PK TT +ET TTV + T P + TS+ Sbjct: 229 TDAPATTLAPKTTTALETTVEAKTTV-VPETTPALETTSA 267 >SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 286 Score = 28.3 bits (60), Expect = 3.0 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +3 Query: 108 ATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTS 239 AT +TT ++ P TT TAT +TT T T P A T+ Sbjct: 96 ATATITTYTATVTAPNATTTTPTATTTTTTT-TTTTTPYATTTT 138 >SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 442 Score = 28.3 bits (60), Expect = 3.0 Identities = 16/53 (30%), Positives = 20/53 (37%) Frame = +2 Query: 89 ANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 247 A A +GY+ DN Y + NGY DN P P +K T Sbjct: 382 AEAHVDGYQTYDNPTYDTEHETHAEAHVNGYPTYDNPTCDTHSPARAPAYKRT 434 >SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) Length = 3094 Score = 28.3 bits (60), Expect = 3.0 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +3 Query: 123 TTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSS 242 T A + + PK TT +ET TTV + T P + TS+ Sbjct: 2291 TDAPATTLAPKTTTALETTVEAKTTV-VPETTPALETTSA 2329 Score = 27.5 bits (58), Expect = 5.2 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +3 Query: 123 TTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSS 242 T A + + PK TT +ET TTV + T P + TS+ Sbjct: 776 TDAPATTLAPKTTTALETTVAAKTTV-VPETTPALETTSA 814 >SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2388 Score = 27.9 bits (59), Expect = 3.9 Identities = 17/38 (44%), Positives = 19/38 (50%) Frame = -3 Query: 310 HYFVINFLRYSLLPTASTRERGRLEVRSALGRVHVICT 197 HY + F R PT S R R R E A RVHV C+ Sbjct: 973 HYLKVGFERLPSPPTNSRRRRLRSE---ADARVHVTCS 1007 >SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 806 Score = 27.9 bits (59), Expect = 3.9 Identities = 12/44 (27%), Positives = 22/44 (50%) Frame = +1 Query: 163 P*WKRLRTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNILEN 294 P + L T + CI R +PT + P PW +++N+ ++ Sbjct: 560 PRLEMLNTLLRECIDRHAPLKPTKMTRPPAPWLKELDIQNLQQD 603 >SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 874 Score = 27.5 bits (58), Expect = 5.2 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = -3 Query: 235 VRSALGRVHVICTVVDRFVAVSIRVVIFGRINDVRAVVNRFVAVS 101 VR + R VV R S+RVV+ + VR V+ R+VA++ Sbjct: 772 VRVVMRRYVTSVRVVMRRYVASVRVVMPRYVASVRVVMRRYVAIA 816 Score = 27.1 bits (57), Expect = 6.9 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%) Frame = -3 Query: 235 VRSALGR-VHVICTVVDRFVAV-SIRVVIFGRINDVRAVVNRFVA 107 VR + R V + V+ R+VA+ S+RVV+ + VR V+ R+VA Sbjct: 794 VRVVMPRYVASVRVVMRRYVAIASVRVVMRRYVASVRVVMRRYVA 838 Score = 27.1 bits (57), Expect = 6.9 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = -3 Query: 235 VRSALGRVHVICTVVDRFVAVSIRVVIFGRINDVRAVVNRFVA 107 VR + R VV R S+RVV+ + VR V+ R+VA Sbjct: 818 VRVVMRRYVASVRVVMRRYVASVRVVMRRYVTSVRVVMRRYVA 860 >SB_51906| Best HMM Match : DUF1621 (HMM E-Value=0.22) Length = 266 Score = 27.5 bits (58), Expect = 5.2 Identities = 14/53 (26%), Positives = 32/53 (60%) Frame = +3 Query: 111 TNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAV 269 TN++TT+ T++I T+ T T ++ T+ IT T+ +T ++ +++ + + Sbjct: 168 TNIITTSNTNIITTTTITITITIT-ITITITITITI-TITITITITITITITI 218 >SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3) Length = 515 Score = 27.1 bits (57), Expect = 6.9 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +2 Query: 92 NAQGNGYEPIDNRPYIVNPPKDYNPNGNGYE--PIDNGAYYVDPP 220 N G ++P RPY P + PNG+ E P++N +PP Sbjct: 187 NHSGPPFKP-GQRPYQHGGPDQFGPNGHTEEMRPLENRGPPFEPP 230 >SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024) Length = 249 Score = 27.1 bits (57), Expect = 6.9 Identities = 14/52 (26%), Positives = 24/52 (46%) Frame = +3 Query: 111 TNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLA 266 T TT + ITT T T +STT+ T T T++ +++++ Sbjct: 84 TTTTTTFSATTTTTTITTTTTTTTTISTTISTTTTTTTISTTTTTITAVIIS 135 >SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1141 Score = 27.1 bits (57), Expect = 6.9 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = +3 Query: 93 TLKETAT-NLLTTARTSLILPKITTLME-TATNLSTTVHITWTLPKADLTS 239 T ET T +L+TTA + +TT E T +L+TT + T P+ S Sbjct: 164 TAPETTTASLVTTAPETTTASLVTTAPEATTASLATTASLATTAPETTTAS 214 Score = 27.1 bits (57), Expect = 6.9 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Frame = +3 Query: 84 LWPTLKETAT-NLLTTARTSLILPKITTLMETAT-NLSTTVHITWTLPKADLTSSLPLSL 257 L T ET T +L+TTA + +TT ET T +L+TT T T A +L Sbjct: 311 LLTTAPETTTASLVTTAPEATTASLVTTAPETTTASLATTAPETTTASLATTAPETTTAL 370 Query: 258 VLAVGSKEYLRKLIT 302 ++ + L T Sbjct: 371 LVTTAPETATASLAT 385 Score = 26.6 bits (56), Expect = 9.1 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Frame = +3 Query: 93 TLKETAT-NLLTTARTSLILPKITTLME-TATNLSTTVHITWTLPKADLTSSLPLSLVLA 266 T ET T +L TTA + +TT E T +TT + T P+A S +L++ Sbjct: 74 TAPETTTASLATTAPETTTASFLTTAPEATTAPETTTASLVTTAPEATTASLATTALLVT 133 Query: 267 VGSKEYLRKLIT 302 + L+T Sbjct: 134 TAPEATTASLVT 145 >SB_27578| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 266 Score = 26.6 bits (56), Expect = 9.1 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%) Frame = +2 Query: 131 PYIVNPPKDY--NPNGNGYEPIDNGAYYVDPPQG 226 P+ ++P Y +PNG Y NG YV P G Sbjct: 8 PFSISPGVQYVFHPNGVQYVTQPNGVQYVTHPNG 41 Score = 26.6 bits (56), Expect = 9.1 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%) Frame = +2 Query: 134 YIVNPPKDY--NPNGNGYEPIDNGAYYVDPPQGRPY 235 Y+ +P Y +PNG Y NG +V P G Y Sbjct: 116 YVTHPNAQYVAHPNGAQYVTHPNGVQFVTHPNGVQY 151 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,921,181 Number of Sequences: 59808 Number of extensions: 260418 Number of successful extensions: 1052 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 904 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1037 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 859323430 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -