Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10i04
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f...    36   0.034
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f...    34   0.078
At3g46870.1 68416.m05087 pentatricopeptide (PPR) repeat-containi...    30   1.3  
At2g19690.1 68415.m02301 phospholipase A2 beta, secretory low mo...    29   3.9  
At1g77300.1 68414.m09002 SET domain-containing protein similar t...    28   5.1  
At1g20450.2 68414.m02549 dehydrin (ERD10) identical to dehydrin ...    28   6.8  
At1g20450.1 68414.m02548 dehydrin (ERD10) identical to dehydrin ...    28   6.8  

>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 117

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 22/46 (47%), Positives = 24/46 (52%)
 Frame = +2

Query: 149 CYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSEGNVG 286
           C+R   PVCGTDG TY   C  D A     G RV  +G C  GN G
Sbjct: 48  CFRAD-PVCGTDGVTYWCGC-PDAACH---GARVVKKGACDTGNAG 88


>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 144

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 125 LAYPPSCA--CYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSEGN 280
           +A P SC   C+R   PVCG D  TY       CA     G+RV  QG C  GN
Sbjct: 65  IAKPASCPVQCFRPD-PVCGEDSVTY----WCGCADALCHGVRVVKQGACDVGN 113


>At3g46870.1 68416.m05087 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 257

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 570 PSLESLIVAQFKRQSLLYVIPSLPQTGFISRVHVHEGYLLGP 445
           PS+  +  +  K ++LL+ IP  P T F+SR   H+G   GP
Sbjct: 26  PSIHRISFSNLKPKTLLHPIPPKPFTVFVSR--FHDGRPRGP 65


>At2g19690.1 68415.m02301 phospholipase A2 beta, secretory low
           molecular weight identical to secretory low molecular
           weight phospholipase A2 beta [Arabidopsis thaliana]
           GI:25992715; contains INTERPRO domain IPR001211
           phospholipase A2
          Length = 147

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 185 GKTYNNECLLDCATRDDPGLRVRYQGPCSEGNVGFPACH-CDYDLNQVCGSDNH 343
           G   + EC   C  ++   L +RY   C  G+ G P    CD DL+  C   +H
Sbjct: 24  GVARSEECTRTCIAQNCDTLSIRYGKYCGIGHSGCPGEEPCD-DLDACCKIHDH 76


>At1g77300.1 68414.m09002 SET domain-containing protein similar to
           huntingtin interacting protein 1 [Homo sapiens]
           GI:12697196; contains Pfam profile PF00856: SET domain
          Length = 1759

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 410 SGLCADEVKIVDGPSKYPSCTCTREMKP-VCGSDGITYNND 529
           SG+  +   + D P ++ S   T+ +KP    SDGI+Y  D
Sbjct: 177 SGIDTESTFVNDAPEQFESLETTKHIKPDEVESDGISYRFD 217


>At1g20450.2 68414.m02549 dehydrin (ERD10) identical to dehydrin
           ERD10 (Low-temperature-induced protein LTI45)
           [Arabidopsis thaliana] SWISS-PROT:P42759
          Length = 259

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +1

Query: 601 GYSRRPWDARGLPRNTTPVIELHTPLVQV 687
           G+S++P D++ +  NTTP++E  TP+  +
Sbjct: 199 GHSKKPEDSQVV--NTTPLVETATPIADI 225


>At1g20450.1 68414.m02548 dehydrin (ERD10) identical to dehydrin
           ERD10 (Low-temperature-induced protein LTI45)
           [Arabidopsis thaliana] SWISS-PROT:P42759
          Length = 260

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +1

Query: 601 GYSRRPWDARGLPRNTTPVIELHTPLVQV 687
           G+S++P D++ +  NTTP++E  TP+  +
Sbjct: 200 GHSKKPEDSQVV--NTTPLVETATPIADI 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,666,214
Number of Sequences: 28952
Number of extensions: 309003
Number of successful extensions: 753
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)