Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10i03
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    27   1.8  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    26   4.3  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   4.3  

>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 429 SADFQGTRAMEGTDRDIRAAVPVTRATNLDTTNTD-PVSTGTP 554
           S DF+ T  M G + D+    P     NL+ T TD P+S   P
Sbjct: 425 SKDFKETEDMNGAE-DMHGRAPQITKDNLNLTTTDSPMSEAEP 466


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 599 SDNFRVVARSTNEKKKVETV 658
           SD+  V  RST+EK+KVE+V
Sbjct: 49  SDSKNVDGRSTSEKRKVESV 68


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 524 QYRSSFDRYPATNAGNFFGGYGDGYSDNFR 613
           Q  S FD+Y +      + GY  G+SDNFR
Sbjct: 459 QQASDFDQYVS-----LYSGYLQGFSDNFR 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,369
Number of Sequences: 5004
Number of extensions: 28044
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)