Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10i03
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39796| Best HMM Match : VWA (HMM E-Value=0) 37 0.017
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13) 33 0.21
SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2) 33 0.28
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_41870| Best HMM Match : DUF963 (HMM E-Value=0.22) 31 1.1
SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024) 29 3.4
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_46264| Best HMM Match : rve (HMM E-Value=1.9e-16) 28 7.9
SB_11488| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
Length = 2119
Score = 36.7 bits (81), Expect = 0.017
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = -2
Query: 571 ITSVGRGVPVETGSVLVVSRFVARVTGTAALISRSVPSIARVP*KSAEASLITALISALV 392
+T+ G T S + TA + V + +V ++A ++ + L S V
Sbjct: 1754 LTTTSTGTLTSTHHTTHTSTETSTHVTTATETATEVTTATQVTTETAVSTAVQTLTSTHV 1813
Query: 391 TTIVTAKPALITLT-RITETGVAVT*TGISVTETRAAVARI 272
TT + A +TLT TET AV T + T T AVA +
Sbjct: 1814 TTATNTRNATLTLTHHKTETSTAVAMTTVPHTVTTTAVALV 1854
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 33.9 bits (74), Expect = 0.12
Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Frame = -2
Query: 571 ITSVGRGVPVETGSVLVVSRFVARVTGTAAL-----ISRSVPSIARVP*KSAEASLITAL 407
+T T +V + VT TAA ++ +V + + +T
Sbjct: 227 VTVTATAATTVTATVTAATTVTVTVTATAATTVTVTVTATVTATVTATVTVTATTTVTVT 286
Query: 406 ISALVTTIVTAKPALITLTRITETGVAVT*T-GISVTETRAAVA 278
+A VT IVT L +TET A T T +VT T A A
Sbjct: 287 ATATVTVIVTVTATLAVTVTVTETAAAATATVTATVTTTTTATA 330
Score = 32.3 bits (70), Expect = 0.37
Identities = 27/82 (32%), Positives = 38/82 (46%)
Frame = -2
Query: 517 SRFVARVTGTAALISRSVPSIARVP*KSAEASLITALISALVTTIVTAKPALITLTRITE 338
S A VT TA + ++ SA A+ +TA ++A VT VTA A T +T
Sbjct: 187 STVTATVTATATATATVTATVTAAA--SATAA-VTATVTATVTVTVTATAA----TTVTA 239
Query: 337 TGVAVT*TGISVTETRAAVARI 272
T A T ++VT T A +
Sbjct: 240 TVTAATTVTVTVTATAATTVTV 261
Score = 31.9 bits (69), Expect = 0.49
Identities = 31/109 (28%), Positives = 41/109 (37%), Gaps = 8/109 (7%)
Frame = +3
Query: 261 VTEIILATAARVSVTEIPV*VTATPVSVIRVK-----VIRAGLAVTMVVTKADIKAV--- 416
VT + ATAA + VTAT + + V + A VT++VT AV
Sbjct: 247 VTVTVTATAATTVTVTVTATVTATVTATVTVTATTTVTVTATATVTVIVTVTATLAVTVT 306
Query: 417 IREASADFQGTRAMEGTDRDIRAAVPVTRATNLDTTNTDPVSTGTPRPT 563
+ E +A T T A T AT TT +T T T
Sbjct: 307 VTETAAAATATVTATVTTTTTATATATTTATATATTTATATATATATAT 355
>SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)
Length = 1027
Score = 33.1 bits (72), Expect = 0.21
Identities = 25/100 (25%), Positives = 40/100 (40%)
Frame = -2
Query: 571 ITSVGRGVPVETGSVLVVSRFVARVTGTAALISRSVPSIARVP*KSAEASLITALISALV 392
+T+V T + T A L + + + +A A+L TA +A V
Sbjct: 607 VTTVATAAATVTTVTTAAATLTTVTTAAATLTTVTTAAATLTTVTTAAATLTTA--AATV 664
Query: 391 TTIVTAKPALITLTRITETGVAVT*TGISVTETRAAVARI 272
TT+ TA L T+T T VT ++T A + +
Sbjct: 665 TTVTTAAATLTTVTTAAATLTTVTIAAATLTTAAATLTTV 704
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = -2
Query: 532 SVLVVSRFVARVTGTAALISRSVPSIARVP*KSAEASLITALISALVTTIVTAKPALITL 353
+V + + VT AA ++ + A + +A + +T +A +TT+ TA L T+
Sbjct: 629 TVTTAAATLTTVTTAAATLTTVTTAAATLTTAAATVTTVTTA-AATLTTVTTAAATLTTV 687
Query: 352 TRITETGVAVT*TGISVTETRAAV 281
T T T +VT A V
Sbjct: 688 TIAAATLTTAAATLTTVTTAAATV 711
>SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2)
Length = 760
Score = 32.7 bits (71), Expect = 0.28
Identities = 24/73 (32%), Positives = 35/73 (47%)
Frame = -1
Query: 569 YQRWSRGTGRNWICIGCIQICSPGNRHCRSDIPVCTLHSPGTLKVRRSLPDNRLDIRLGN 390
Y R SRG + +C+ + P RH R D VC + R S D+++ + L N
Sbjct: 169 YYRHSRGDHK--VCV--VLDNHPYYRHSRGDHKVCVVLDNHPY-YRHSRGDHKVCVVLDN 223
Query: 389 HHSYRQTRPDNFD 351
H YR +R D+ D
Sbjct: 224 HPYYRHSRGDHKD 236
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 32.7 bits (71), Expect = 0.28
Identities = 25/96 (26%), Positives = 43/96 (44%)
Frame = -2
Query: 568 TSVGRGVPVETGSVLVVSRFVARVTGTAALISRSVPSIARVP*KSAEASLITALISALVT 389
T++ V T SV+ + VA T TA + + ++ + + A+ +TA +++VT
Sbjct: 1122 TTIAAAVTASTASVVTTTATVAAATTTAEKATTTTAAMVKA---TTTAAAVTASTASVVT 1178
Query: 388 TIVTAKPALITLTRITETGVAVT*TGISVTETRAAV 281
T A T + T A+ + T T AAV
Sbjct: 1179 KTATVAAATTTAEKATTLTAAM----VEATTTAAAV 1210
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = -2
Query: 532 SVLVVSRFVARVTGTAALISRSVPSIARVP*KSAEASLITALISALVTTIVTAKPALITL 353
S +V ++ + +T +V + A + A+ +TA +++VTT T A T
Sbjct: 1090 SSMVQAKAASSITTPLKTTVVAVTAAATTTAATTIAAAVTASTASVVTTTATVAAATTTA 1149
Query: 352 TRITETGVAV---T*TGISVTETRAAV 281
+ T T A+ T T +VT + A+V
Sbjct: 1150 EKATTTTAAMVKATTTAAAVTASTASV 1176
>SB_41870| Best HMM Match : DUF963 (HMM E-Value=0.22)
Length = 233
Score = 30.7 bits (66), Expect = 1.1
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = -2
Query: 580 SKEITSVGRGVPVETGSVLVVSRFVARVTGTAALISRSVPSIARVP*KSAEASLITALIS 401
S+ I + R V + SVL SR V + + SRSV + +R ++ + L T S
Sbjct: 71 SRYILATSRSVLATSRSVLATSRSVLATSRSVLATSRSVLATSRYILATSRSVLATGRSS 130
Query: 400 ALVT--TIVTAKPALITLTRITETGVAVT*TGISVTETRAAV 281
+ + T++ L T + T +V T SV T +V
Sbjct: 131 FATSRYILATSRSVLATSRSVLATSRSVLATSRSVLATSRSV 172
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = -2
Query: 580 SKEITSVGRGVPVETGSVLVVSRFVARVTGTAALISRSVPSIARVP*KSAEASLITALIS 401
S+ I + R V + SVL SR V + + SRSV + +R ++ + L T S
Sbjct: 134 SRYILATSRSVLATSRSVLATSRSVLATSRSVLATSRSVLATSRYILATSRSVLATGRSS 193
Query: 400 ALVT--TIVTAKPALITLTRITETG 332
+ + T++ L T + TG
Sbjct: 194 FATSRYILATSRSVLATSRSVLATG 218
>SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024)
Length = 249
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Frame = -2
Query: 568 TSVGRGVPVETGSVLVVSRFVARVTGTAALISRSVPSIARVP*KSAEASLITA---LISA 398
T+ + T + +S ++ T T IS + +I V + + TA I+A
Sbjct: 93 TTTTTTITTTTTTTTTISTTISTTT-TTTTISTTTTTITAVIISTTTTTTSTANTTTITA 151
Query: 397 LVTTIVTAKPALITLTRITETGVAVT*TGISVT 299
+TT T T+T IT T A T IS T
Sbjct: 152 TITTTTTTITITATITTITTTITATITTTISTT 184
>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +2
Query: 488 SAGYPGYKSGYNQY--RSSFDRYPATNAGNFFGGYGDGYSD 604
S GY GY QY R + + G GGYG GY+D
Sbjct: 704 SGGYGGYNRSPQQYGGRGGWQK-DYQRGGRGGGGYGGGYND 743
>SB_46264| Best HMM Match : rve (HMM E-Value=1.9e-16)
Length = 979
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 403 SALVTTIVTAKPALITLTRITETGVAVT*TGIS 305
SAL+TT +T++ T++T G ++ TGIS
Sbjct: 483 SALLTTFITSEKCEFAKTQVTFLGQLISATGIS 515
>SB_11488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 500 GNRHCRSDIPVCTLHSPGTLKVRR--SLPDNRLDIRLGNH 387
GNRH S+I +LH + R LPD RL+ R+G H
Sbjct: 131 GNRHA-SEIAAMSLHLLNYVTDFRIEHLPDTRLEFRMGIH 169
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,004,230
Number of Sequences: 59808
Number of extensions: 227472
Number of successful extensions: 1170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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