Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10i01
(295 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 1.8
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual 25 1.8
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch... 24 4.0
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 24 4.0
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 24 5.3
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 24 5.3
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 23 7.1
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo... 23 7.1
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb... 23 7.1
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 23 9.3
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 23 9.3
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 1.8
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 85 KCVEFIYGGCQANANNFETIE-ECEAACLYN 174
+ + +++GGC ++ ETIE E E CL+N
Sbjct: 253 RTLAYVFGGCM---HSLETIEGEEEGECLFN 280
>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
Length = 268
Score = 25.4 bits (53), Expect = 1.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 1 ANPDCLLPIKTGP 39
ANPDCLLP+ P
Sbjct: 84 ANPDCLLPLNKQP 96
>SPBC543.08 |||phosphoinositide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 250
Score = 24.2 bits (50), Expect = 4.0
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +1
Query: 220 YGNVGLWWW 246
+G +GLWWW
Sbjct: 194 FGLLGLWWW 202
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.2 bits (50), Expect = 4.0
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 182 SHVLYR--QAASHSSIVSKLLAFAWQPP*MNSTHLSSDES*AYLRK 51
SH+L ASH+++ +L + + THL S+ES + LR+
Sbjct: 1124 SHILTALLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLRE 1169
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 23.8 bits (49), Expect = 5.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 186 FMSLIIYGNN*LW*CWFMVVVILQFM 263
F S I+ G W CW V +ILQF+
Sbjct: 219 FCSYILMGL--AWTCWPKVNIILQFL 242
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 23.8 bits (49), Expect = 5.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 165 AGCFALFYSLKIISIRLATSVDEFN 91
A CF+ LK++ +RL V E N
Sbjct: 63 AKCFSTLLGLKLLCVRLDNFVQEAN 87
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 23.4 bits (48), Expect = 7.1
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Frame = +1
Query: 52 FRRYAYDSSEDKCVEFIYG------GCQANANNFETIEECEAACLYNTCECSC 192
F+RY ++D+C + C A + + +++ + NT EC C
Sbjct: 1233 FQRYESTLTDDQCFINVSPLLLKCPSCNATSFSLRSVKSLKETLYANTVECDC 1285
>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 23.4 bits (48), Expect = 7.1
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = -1
Query: 286 YLSHLFYFINCKITTTINQHYHN*LLPYIIKDMNT 182
+L L YF++ + + +NQ Y + P + + T
Sbjct: 26 FLYSLIYFVDVDLVSKVNQLYDQQIAPMLSDAIGT 60
>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 23.4 bits (48), Expect = 7.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -1
Query: 286 YLSHLFYFINCKITTTINQHYHN*LLPY 203
Y H + N K+ I+ H+H +PY
Sbjct: 146 YFWHRYLHYNKKLYNMIHAHHHRLQVPY 173
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 23.0 bits (47), Expect = 9.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 226 NVGLWWW*FCNL*NK 270
N+GLWW+ F + N+
Sbjct: 248 NLGLWWYFFTEMFNE 262
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 23.0 bits (47), Expect = 9.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 50 VSEDMPTIHRRTNALNSSTEVAKRML 127
V+ + ++H+ ALN S+ V K +L
Sbjct: 497 VNSPLSSVHQLREALNHSSSVTKEVL 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,210,339
Number of Sequences: 5004
Number of extensions: 21766
Number of successful extensions: 58
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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