Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10i01
         (295 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793           28   1.1  
08_02_0440 + 17192122-17192691,17193947-17194912                       27   2.0  
08_01_0843 - 8276619-8278991                                           24   2.4  
08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195           23   3.1  
08_01_0778 + 7548307-7549220,7551682-7552021                           27   3.5  
01_01_0861 + 6710815-6713142                                           27   3.5  
04_03_0914 + 20788103-20789642,20790036-20790529                       25   8.0  
04_03_0826 + 20103105-20103697,20104222-20104391,20104487-201047...    25   8.0  

>11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793
          Length = 783

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 64  AYDSSEDKCVEFIYGGCQANAN-NFETIEECEAACLYNTC 180
           A ++   KCV  + GGC+ + + N++    CE     N C
Sbjct: 320 AIETKLSKCVAKVLGGCEEHGHVNYDASPPCEHILSLNMC 359


>08_02_0440 + 17192122-17192691,17193947-17194912
          Length = 511

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 55  RRYAYDSSEDKCVEFIYGGCQANANN 132
           R+Y Y+ +E      IYG C+ N N+
Sbjct: 199 RKYKYEPNEKMYTVLIYGWCKVNRND 224


>08_01_0843 - 8276619-8278991
          Length = 790

 Score = 23.8 bits (49), Expect(2) = 2.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 139 TIEECEAACLYNTCEC 186
           TIEEC+A C+ + C C
Sbjct: 378 TIEECKAICM-SDCAC 392



 Score = 21.8 bits (44), Expect(2) = 2.4
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +1

Query: 40  CRGGFRRYAYDSSEDKCVEFIYGGCQANANN 132
           C  GF   + + S   C     GGC  N+ N
Sbjct: 318 CLPGFEFLSANQSTQGCWRAQTGGCTGNSPN 348


>08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195
          Length = 837

 Score = 23.4 bits (48), Expect(2) = 3.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 139 TIEECEAACLYNTCEC 186
           T+EEC+A CL + C C
Sbjct: 378 TMEECKAICL-SDCAC 392



 Score = 21.8 bits (44), Expect(2) = 3.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 40  CRGGFRRYAYDSSEDKCVEFIYGGCQANANN 132
           C  GF   + + +   C     GGC  N++N
Sbjct: 318 CLPGFEFSSANQTTQGCWRVRTGGCTGNSSN 348


>08_01_0778 + 7548307-7549220,7551682-7552021
          Length = 417

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 98  NSTHLSSDES*AYLRKPPLQGPVFIGSKQSG 6
           NS+  SSD     L+ P L+GPV + S   G
Sbjct: 61  NSSVASSDSRTGMLKHPGLRGPVIVSSYSVG 91


>01_01_0861 + 6710815-6713142
          Length = 775

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 139 TIEECEAACLYNTCECS 189
           +I ECEAAC Y+ C C+
Sbjct: 361 SIRECEAAC-YSDCSCT 376


>04_03_0914 + 20788103-20789642,20790036-20790529
          Length = 677

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 115 QANANNFETIEECEAACLYNTCECS 189
           + N  N ++  EC+  CL N C C+
Sbjct: 370 EQNIENVKSSSECDQVCL-NNCSCT 393


>04_03_0826 +
           20103105-20103697,20104222-20104391,20104487-20104716,
           20104825-20104933,20104967-20105154,20105818-20105919,
           20106114-20106395,20106504-20106625,20106708-20107020,
           20107096-20107329,20107477-20107767,20107975-20108286
          Length = 981

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 133 FETIEECEAACLYNTCECSCP 195
           F  +E+ +A C Y  C C  P
Sbjct: 852 FHPLEKTQACCFYRYCTCILP 872


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,852,855
Number of Sequences: 37544
Number of extensions: 143036
Number of successful extensions: 354
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)