Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10i01
         (295 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin ...    29   0.71 
At1g34355.1 68414.m04265 forkhead-associated domain-containing p...    28   1.2  
At1g61420.1 68414.m06921 S-locus lectin protein kinase family pr...    27   2.2  
At1g71290.1 68414.m08227 F-box family protein-related contains w...    26   3.8  
At1g66650.1 68414.m07573 seven in absentia (SINA) protein, putat...    25   6.6  
At5g67200.1 68418.m08471 leucine-rich repeat transmembrane prote...    25   8.7  
At4g35725.1 68417.m05070 expressed protein                             25   8.7  
At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nea...    25   8.7  

>At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin
           family protein / PAN domain-containing protein contains
           Pfam profiles: PF01453 lectin (probable mannose
           binding), PF00024 PAN domain
          Length = 764

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 1   ANPDCLLPIKTGPCRGGFRRYAYDSSEDKCVEFIYGGCQANANNFETI--EECEAACLYN 174
           ++P CL+P +   C+ GF    + + E      +YG   AN +    I  + C+  CL N
Sbjct: 319 SDPKCLVPYQKPGCKSGFNMVKFKNLE------LYGIYPANDSVISQISSQRCKKLCLEN 372

Query: 175 T 177
           +
Sbjct: 373 S 373


>At1g34355.1 68414.m04265 forkhead-associated domain-containing
           protein / FHA domain-containing protein
          Length = 1477

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 165 AGCFALFYSLKIISIRLATSVDEFNAFVLR*IVGISSE 52
           +GC A   + ++ S+ L   V E   FV + ++G+SSE
Sbjct: 549 SGCSAFDLAAEVESLSLHQEVSEETEFVTKEVMGVSSE 586


>At1g61420.1 68414.m06921 S-locus lectin protein kinase family
           protein contains Pfam domains, PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain, and
           PF01453: Lectin (probable mannose binding)
          Length = 807

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 130 NFETIEECEAACLYNTCEC 186
           +F  +EEC+ +CL+N C C
Sbjct: 361 SFVNVEECQKSCLHN-CSC 378


>At1g71290.1 68414.m08227 F-box family protein-related contains
          weak hit to TIGRFAM TIGR01640 : F-box protein
          interaction domaincontains weak hit to TIGRFAM
          TIGR01640 : F-box protein interaction domain;
          Length = 199

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 22 PIKTGPCRGGFRRYAYD-SSEDKCV 93
          P+  G C+GGF  Y  D S+ DK V
Sbjct: 23 PVTEGLCKGGFLYYGADESNSDKSV 47


>At1g66650.1 68414.m07573 seven in absentia (SINA) protein, putative
           similar to SIAH2 protein [Brassica napus var. napus]
           GI:7657878; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 329

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/58 (25%), Positives = 22/58 (37%)
 Frame = +1

Query: 13  CLLPIKTGPCRGGFRRYAYDSSEDKCVEFIYGGCQANANNFETIEECEAACLYNTCEC 186
           C LPI    CR         +    C   IYG C+ +      ++  E  C++  C C
Sbjct: 121 CKLPIGDVRCRA--MEKVIKAGLVSCSNAIYG-CKQSTTYGNQLQSHEKVCVFAPCSC 175


>At5g67200.1 68418.m08471 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 669

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 289 FYLSHLFYFINCKITTTINQHYHN*LLP 206
           F+L   F+FI  +++     +Y N LLP
Sbjct: 5   FFLPFFFFFILLRVSAGAEPNYFNSLLP 32


>At4g35725.1 68417.m05070 expressed protein
          Length = 123

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 148 ECEAACLYNTCECSCP*LYMVIINYGNV 231
           EC+  C   +C C CP L  +  +  +V
Sbjct: 58  ECKELCFATSCYCVCPNLQSLTTSEASV 85


>At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nearly
           identical to vacuolar sorting receptor homolog
           (GP:1737218) [Arabidopsis thaliana]
          Length = 623

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/50 (28%), Positives = 19/50 (38%)
 Frame = +1

Query: 43  RGGFRRYAYDSSEDKCVEFIYGGCQANANNFETIEECEAACLYNTCECSC 192
           RGGF   A      K  +   G       N E ++EC+   +    EC C
Sbjct: 480 RGGFTYSACVDDHSKDCKCPLGFKGDGVKNCEDVDECKEKTVCQCPECKC 529


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,268,337
Number of Sequences: 28952
Number of extensions: 114480
Number of successful extensions: 267
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 271185840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)