Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10h23
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    44   2e-05
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    43   3e-05
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   3.7  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   5.0  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    26   5.0  

>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 27/116 (23%), Positives = 51/116 (43%)
 Frame = +3

Query: 42  AFAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXXXXXXXX 221
           A+ Y  +L+     I   ++  + + +LK D+ NPID                       
Sbjct: 4   AWIYFTSLMLTCANIMLQMYFTVMYSDLKDDFINPIDLSRKLNWYVLPEMGFQAFSALLL 63

Query: 222 XXSGEWFSLLINIPLILYHIHRYYTRPVMSGPGLYDPTSIMNADVLTSCQREGWIK 389
             SG W + L+N+P++ ++      + +MS   ++D T+I   DV +S Q+  + K
Sbjct: 64  LLSGAWITFLLNVPMLAWN-----AKMIMSNTHMHDSTTIFK-DV-SSRQKRSFFK 112


>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +3

Query: 84  IFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXXXXXXXXXXSGEWFSLLINIP 263
           +   IF VI F +L+ DY NPID CN                        +W   L N+P
Sbjct: 24  MLLQIFCVIMFSDLEMDYINPIDLCNKLNDLVMPEIISHTLVTLLLLLGKKWLLFLANLP 83

Query: 264 LILYHIHR 287
           L+++H ++
Sbjct: 84  LLVFHANQ 91


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 273 YHIHRYYTRPVMSGPGLYDPTSIMNADVLTSCQREG 380
           +H+ RY+   V +  GLY   S  +   L  C R+G
Sbjct: 454 FHLERYHLHAVAAMGGLYQIMSSTHLKNLFFCSRKG 489


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 47  CVYCCLNNRCIFNIFLYISRYSLRRTKN*LQKSHRSMQ*FE-SFGFAGIFTAF 202
           CV  C N++ I   FL      L   +N L+K H S + F  S G  G+  +F
Sbjct: 826 CVPACFNSQQILVTFLKFFIKILGSYRNYLRKPHMSRENFGISKGSGGLIGSF 878


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -1

Query: 456 TPQSTPRSFHKDIGRTTASKMPALSSLPS 370
           TPQ T RS  K      +SKMP   SLPS
Sbjct: 251 TPQKTVRSIVKQTSSPHSSKMPK-HSLPS 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,412
Number of Sequences: 5004
Number of extensions: 44014
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)