Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10h23
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0261 + 1926458-1926523,1926959-1927144                           34   0.077
02_03_0231 - 16636377-16636403,16636590-16636645,16636793-166368...    31   0.94 

>06_01_0261 + 1926458-1926523,1926959-1927144
          Length = 83

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 17/78 (21%), Positives = 30/78 (38%)
 Frame = +3

Query: 45  FAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXXXXXXXXX 224
           F ++ A      LI   I+ ++   +L+ DY NP D  +                     
Sbjct: 3   FVWLTAFFLVVALIVLVIYQLMCLADLEFDYINPFDSSSRINKVVIPEFVLQAALSVLFL 62

Query: 225 XSGEWFSLLINIPLILYH 278
            SG W   L++ P++ Y+
Sbjct: 63  LSGHWAMFLLSAPMVYYN 80


>02_03_0231 -
           16636377-16636403,16636590-16636645,16636793-16636853,
           16637590-16637649,16638007-16638096,16638775-16638906,
           16639016-16639293,16639916-16639949,16640036-16640105,
           16641170-16641282,16641654-16641836,16642106-16642283,
           16642958-16643142,16643347-16643477,16643620-16643772,
           16643849-16643995,16644662-16644737
          Length = 657

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = -3

Query: 229 DSKNSTLMSKCSKYSGKTKGFKLLH*SMGFL*SVFSSSKAIT*NIEKNIKNASVIKATIY 50
           D+K   L S    +SG   G KL H S      ++  ++ I  +++ ++KN S+I   ++
Sbjct: 58  DNKTQLLRSSSGGFSGAENGGKLGHGSPSRDRLIYVLTQLIGQHVDVHVKNGSIISGILH 117

Query: 49  AKAG--KLNAIFKVLQ 8
           A      L  I K+ Q
Sbjct: 118 ATNSDKDLGVIMKMAQ 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,107,726
Number of Sequences: 37544
Number of extensions: 254007
Number of successful extensions: 482
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)