Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10h23
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11057| Best HMM Match : Cornichon (HMM E-Value=4.5e-07)             55   4e-08
SB_30477| Best HMM Match : Metallothionein (HMM E-Value=8.3)           27   3.0  
SB_29033| Best HMM Match : Ion_trans_2 (HMM E-Value=8.1e-29)           28   5.1  
SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_15075| Best HMM Match : Extensin_2 (HMM E-Value=0.39)               28   6.8  
SB_24110| Best HMM Match : Metallothionein (HMM E-Value=1.9)           27   8.3  
SB_11436| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_11057| Best HMM Match : Cornichon (HMM E-Value=4.5e-07)
          Length = 340

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 23/59 (38%), Positives = 34/59 (57%)
 Frame = +3

Query: 105 VIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXXXXXXXXXXSGEWFSLLINIPLILYHI 281
           +IAFD+LKTDYKNP+D CNS                      G++ +++ N+PLI+YH+
Sbjct: 280 IIAFDDLKTDYKNPVDLCNSLNPLVLPEMGIHAFITLLFLVGGQFTAVVFNLPLIVYHV 338


>SB_30477| Best HMM Match : Metallothionein (HMM E-Value=8.3)
          Length = 178

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/49 (26%), Positives = 18/49 (36%)
 Frame = +1

Query: 181 CRNIYCICSLMYCSCCPENGFRXXXXXXXXXXXXXXXXQGQSCQVQVCM 327
           C+  YC+C + YC C  E                    +   CQV+ CM
Sbjct: 79  CQVEYCMCQVEYCMCQVEYCMYQVEYCMCQVEYCMCQVEYCMCQVEYCM 127



 Score = 25.4 bits (53), Expect(2) = 3.0
 Identities = 12/45 (26%), Positives = 16/45 (35%)
 Frame = +1

Query: 193 YCICSLMYCSCCPENGFRXXXXXXXXXXXXXXXXQGQSCQVQVCM 327
           YC+C + YC C  E                    +   CQV+ CM
Sbjct: 76  YCMCQVEYCMCQVEYCMCQVEYCMYQVEYCMCQVEYCMCQVEYCM 120



 Score = 22.2 bits (45), Expect(2) = 3.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 181 CRNIYCICSLMYC 219
           C+  YC+C + YC
Sbjct: 30  CQVEYCMCQVEYC 42


>SB_29033| Best HMM Match : Ion_trans_2 (HMM E-Value=8.1e-29)
          Length = 387

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -3

Query: 256 LINNENHSPD--SKNSTLMSKCSKYSGKTKGFKLL 158
           ++ NEN + D  + NS  M+ C KY+  T+ F+LL
Sbjct: 32  VLENENENKDVVNLNSLRMTFCKKYNISTEDFELL 66


>SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 252 INIPLILYHIHRYYT 296
           I  P ++YH+HRY+T
Sbjct: 382 IRTPSVMYHVHRYFT 396


>SB_15075| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
          Length = 541

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 57  VALITDAFLIFFSIFHVIAFDELKTDYKNPID 152
           VAL+   F+ +FS+ ++  F+    DY +P D
Sbjct: 428 VALVPMQFIAYFSLTNISRFEVTDADYAHPSD 459


>SB_24110| Best HMM Match : Metallothionein (HMM E-Value=1.9)
          Length = 237

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/50 (26%), Positives = 19/50 (38%)
 Frame = +1

Query: 181 CRNIYCICSLMYCSCCPENGFRXXXXXXXXXXXXXXXXQGQSCQVQVCMT 330
           C+  YC+C + YC C  E                    +   CQV+ CM+
Sbjct: 135 CQVEYCMCQVEYCMCQVEYCMCQVEYCMYQVEYCIYQVEYCMCQVEYCMS 184



 Score = 23.8 bits (49), Expect(2) = 8.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 193 YCICSLMYCSC 225
           YC+C + YC C
Sbjct: 69  YCMCQVEYCMC 79



 Score = 22.2 bits (45), Expect(2) = 8.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 181 CRNIYCICSLMYC 219
           C+  YC+C + YC
Sbjct: 23  CQVEYCMCQVEYC 35


>SB_11436| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = +1

Query: 178 FCRNIYCICSLMYCSCCPENGFRXXXXXXXXXXXXXXXXQGQSCQV 315
           +C N+ CI   +YC+   ENGF                 QG  C +
Sbjct: 159 YCTNLECIN--LYCTATTENGFEELVRRCRNISGVCIGNQGNCCSM 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,289,021
Number of Sequences: 59808
Number of extensions: 327237
Number of successful extensions: 730
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)