Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10h23
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78065-2|CAB01516.2|  145|Caenorhabditis elegans Hypothetical pr...   126   1e-29
AC006812-2|AAK39349.1|   56|Caenorhabditis elegans Hypothetical ...    41   8e-04

>Z78065-2|CAB01516.2|  145|Caenorhabditis elegans Hypothetical
           protein T09E8.3 protein.
          Length = 145

 Score =  126 bits (304), Expect = 1e-29
 Identities = 62/144 (43%), Positives = 80/144 (55%)
 Frame = +3

Query: 24  MAFSFPAFAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXX 203
           MAF+F AF Y++ALI   F IFF+I+ VI  DEL+TDYKNPI+QC +             
Sbjct: 1   MAFTFAAFCYLLALIAVGFCIFFAIYTVICVDELRTDYKNPIEQCRNLNQLILPEYIIHG 60

Query: 204 XXXXXXXXSGEWFSLLINIPLILYHIHRYYTRPVMSGPGLYDPTSIMNADVLTSCQREGW 383
                   S +  S+L N+PL  YHI+ Y  RPVMSGPG+YDPT+I+N   L+S  R  W
Sbjct: 61  TFTVLFIFSWQLISILANLPLAFYHIYTYAKRPVMSGPGIYDPTTILNRSTLSSTLRISW 120

Query: 384 IKXXXXXXXXXXXXXGMIVVLIAA 455
           IK              MI  L+ +
Sbjct: 121 IKLAFYLVSFFYYLYAMIYTLVTS 144


>AC006812-2|AAK39349.1|   56|Caenorhabditis elegans Hypothetical
           protein Y64H9A.1 protein.
          Length = 56

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +3

Query: 303 VMSGPGLYDPTSIMNADVLTSCQREGWIK 389
           +M GPG+YDPT+I+N   L+S  R  WIK
Sbjct: 1   MMPGPGIYDPTTILNRSTLSSTLRISWIK 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,029,900
Number of Sequences: 27780
Number of extensions: 251211
Number of successful extensions: 571
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)