Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10h23
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.1  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   9.4  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   9.4  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   9.4  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 240 FSLLINIPLILYHIHRYYTRPVMSGPGLYDPTSIMNADVLTS 365
           FS  I + LI+Y+  +  +  V     L +    MN D L S
Sbjct: 218 FSYCIPMILIIYYYSQIVSHVVNHEKALREQAKKMNVDSLRS 259


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 287 ILHKASHVRSRSV*PDKYYEC 349
           + + ASH R      DK+Y+C
Sbjct: 78  LTNTASHTRLSCDCDDKFYDC 98


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 287 ILHKASHVRSRSV*PDKYYEC 349
           + + ASH R      DK+Y+C
Sbjct: 83  LTNTASHTRLSCDCDDKFYDC 103


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 287 ILHKASHVRSRSV*PDKYYEC 349
           + + ASH R      DK+Y+C
Sbjct: 83  LTNTASHTRLSCDCDDKFYDC 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,324
Number of Sequences: 438
Number of extensions: 3021
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)