Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10h23
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12340.1 68414.m01426 cornichon family protein contains Pfam ...    41   7e-04
At1g62880.1 68414.m07100 cornichon family protein contains Pfam ...    38   0.005
At1g12390.1 68414.m01432 cornichon family protein contains Pfam ...    36   0.021
At3g12180.1 68416.m01519 cornichon family protein contains Pfam ...    34   0.064
At4g12090.1 68417.m01921 cornichon family protein contains Pfam ...    33   0.11 
At3g51280.1 68416.m05613 male sterility MS5, putative similar to...    28   4.2  
At1g10910.1 68414.m01253 pentatricopeptide (PPR) repeat-containi...    27   9.7  

>At1g12340.1 68414.m01426 cornichon family protein contains Pfam
           profile: PF03311 cornichon protein
          Length = 118

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 19/78 (24%), Positives = 32/78 (41%)
 Frame = +3

Query: 66  ITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXXXXXXXXXXSGEWFS 245
           +T+   +   IFH++   +L+ DY NP D  +                      +G WF 
Sbjct: 4   VTETDKLANGIFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFM 63

Query: 246 LLINIPLILYHIHRYYTR 299
            L+ +P + Y+ H Y  R
Sbjct: 64  TLLCLPYLYYNFHLYSKR 81


>At1g62880.1 68414.m07100 cornichon family protein contains Pfam
           profile: PF03311 cornichon protein
          Length = 137

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 17/82 (20%), Positives = 35/82 (42%)
 Frame = +3

Query: 45  FAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXXXXXXXXX 224
           + +I++ +    L+   ++ +I+  +L+ DY NP D  +                     
Sbjct: 5   WTWIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLCVFYL 64

Query: 225 XSGEWFSLLINIPLILYHIHRY 290
            +G WF  L+ +P + Y+ H Y
Sbjct: 65  VTGHWFMALLCVPYLYYNFHLY 86


>At1g12390.1 68414.m01432 cornichon family protein contains Pfam
           profile: PF03311 cornichon protein
          Length = 137

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 16/73 (21%), Positives = 29/73 (39%)
 Frame = +3

Query: 81  LIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXXXXXXXXXXSGEWFSLLINI 260
           L+   ++ ++   +L+ DY NP D  +                      +G WF  L+ +
Sbjct: 17  LVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCL 76

Query: 261 PLILYHIHRYYTR 299
           P + Y+ H Y  R
Sbjct: 77  PYLYYNFHLYSKR 89


>At3g12180.1 68416.m01519 cornichon family protein contains Pfam
           profile: PF03311 cornichon protein
          Length = 146

 Score = 34.3 bits (75), Expect = 0.064
 Identities = 18/85 (21%), Positives = 30/85 (35%)
 Frame = +3

Query: 45  FAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXXXXXXXXX 224
           F +IV+      L+    + VI   +L+ DY NP +                        
Sbjct: 6   FLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLLFL 65

Query: 225 XSGEWFSLLINIPLILYHIHRYYTR 299
            +  W   L+ +P+ +YH   Y  R
Sbjct: 66  LTWHWVFFLVAVPVTVYHAMLYKER 90


>At4g12090.1 68417.m01921 cornichon family protein contains Pfam
           profile: PF03311 cornichon protein
          Length = 135

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 18/83 (21%), Positives = 34/83 (40%)
 Frame = +3

Query: 51  YIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXXXXXXXXXXS 230
           +I++ +  A LI   I+ +    +L+ D  NP D  +                      +
Sbjct: 7   WIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLCLYYILT 66

Query: 231 GEWFSLLINIPLILYHIHRYYTR 299
           G WF  ++++P + Y+I  Y  R
Sbjct: 67  GHWFMAVLSLPHLFYNIRLYMKR 89


>At3g51280.1 68416.m05613 male sterility MS5, putative similar to
           male sterility MS5 [Arabidopsis thaliana] GI:3859112;
           contains Pfam profile PF00515 TPR Domain
          Length = 430

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 311 RSRSV*PDKYYECRC-INFMSEGRLDKAGILLAVVLPISLWNDRGVD 448
           R+ S+ PD    C   I  M +GR+D+A   L  V P  +   RGVD
Sbjct: 195 RALSIAPDNNKMCNLGICLMKQGRIDEAKETLRRVKPAVVDGPRGVD 241


>At1g10910.1 68414.m01253 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 652

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = -3

Query: 367 HEVNTSAFIILVGSYRPGPDMTGLV*YLCMWYSIKGMLINNENHSPDSKNSTLMSK 200
           H+++   F I +  Y   PD   L+  L  W   +G ++++   +   KNS +  +
Sbjct: 568 HKIDQVQFEIAISRYISQPDKKELLLQLLQWMPGQGYVVDSSTRNLILKNSHMFGR 623


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,956,684
Number of Sequences: 28952
Number of extensions: 221801
Number of successful extensions: 469
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)