Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10h21
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                136   1e-32
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 42   6e-04
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)                    31   1.2  
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_57110| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-22)                 29   2.7  
SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)                  29   3.6  
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   29   4.8  
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)                    28   6.3  
SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)               28   8.4  
SB_44157| Best HMM Match : IRF (HMM E-Value=0)                         28   8.4  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        28   8.4  
SB_10253| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score =  136 bits (330), Expect = 1e-32
 Identities = 77/166 (46%), Positives = 104/166 (62%)
 Frame = +2

Query: 23  MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 202
           MAAG LYTYP++FRA K LIAA+YSGT ++V P F FG+ N + +FLKKFP GKVPAFE+
Sbjct: 1   MAAGKLYTYPDSFRAQKILIAAEYSGTKIEV-PAFTFGKDNHTAEFLKKFPLGKVPAFET 59

Query: 203 ADGKVLLTESNAIAYYVANESLRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQ 382
                            AN   R   L T      + +++D ELLPA+  WVFP  G+MQ
Sbjct: 60  K---------------TANACTRAMPLLTT-----YVNFADQELLPAAATWVFPTYGMMQ 99

Query: 383 FNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 520
           ++KQ+ ++A  D+   + +L+  LL +TFLV ER+TLAD+ V   L
Sbjct: 100 YHKQSTDKAMEDVKKYMTMLNDVLLMKTFLVGERVTLADIAVCCVL 145


>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 4/143 (2%)
 Frame = +2

Query: 173 PAGKVPAFESADGKVLLTESNAIAYYVA--NESLRGGDLATQARVWQWASWSDSELLPAS 346
           P   +P  E+ +G      SN I  Y+A  ++ L G DL  + +V QW   +  +   A 
Sbjct: 45  PFNTLPLLETKEGTFF--SSNTIIRYLAASSDKLYGSDLFQRGQVDQWLDITTCDFEAAV 102

Query: 347 CAWVFPYLGIMQFNKQNVERAK--SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 520
            A      G      ++VE AK  +D+   L  ++ HL  R FLV + +T+AD  V +T 
Sbjct: 103 AAVAIAKEG------RDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSV-ATS 155

Query: 521 LHAFQHVLDPSVRSSLINVQRWF 589
           +      L    R    N+  W+
Sbjct: 156 IAVILTSLGDEDRKPYQNIVSWY 178


>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
          Length = 505

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 56  NFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESN 235
           N   +K +   Q   +  K+ P  V GE N   + +KK     +P      GK +  + +
Sbjct: 105 NIGKFKMVWIDQIDESTKKLKPKMVAGEDNGFVNAIKKVSLEDIPEGNGPSGKAIREKRS 164

Query: 236 AIAYYVANESL 268
            I   + N+SL
Sbjct: 165 IIVNDIENDSL 175


>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 356 VFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLAD 499
           ++P +   Q    NV+R  +DL  + K+     L R F V E  T AD
Sbjct: 73  IYPNIMDEQIRTANVQRGSADLQTSAKITLKKFLPRCFSVIESTTSAD 120


>SB_57110| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-22)
          Length = 559

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 139 LAKYEIRCYFHISPGILCGDQRFISAEVFRISVKYPGRHGWSFRKE 2
           L K  +R   +I    L   + FI+  V  +S+   G+H WSF KE
Sbjct: 200 LRKDSLRTVSNILVAALALSELFITVVVIPLSIIAYGKHLWSFHKE 245


>SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 278 DLATQARVWQWASWSDSELLPASCA 352
           DL T A+V+ WA W   ++   SCA
Sbjct: 78  DLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)
          Length = 141

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 278 DLATQARVWQWASWSDSELLPASCA 352
           DL T A+V+ WA W   ++   SCA
Sbjct: 78  DLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 185 LFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYK 66
           +FR +  + +     S ++ N V +SHQSR IV   T+ K
Sbjct: 102 VFRSKQQAPNKAVGRSDEVTNEVAVSHQSRRIVESETVRK 141


>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
          Length = 1675

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 460  THLPCYRENHTCRCHCLQYTAACFPARARPERPFVAD---KRSALVP 591
            T  P +R +HT     L+     +PA+ RP+ P  A    K+ A VP
Sbjct: 1581 TQCPIFRPSHTIHHPPLRSRNVRYPAQVRPQYPLQASLNVKKGARVP 1627


>SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)
          Length = 554

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 374 IMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV 508
           +M + K +VE  K DL   L+ +   LLTR FL+ + +   D+I+
Sbjct: 194 VMSWIKHDVESRKKDLANLLEHIRFPLLTRKFLI-DTVAKEDLIM 237


>SB_44157| Best HMM Match : IRF (HMM E-Value=0)
          Length = 181

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 100 PGILCGDQRFISAEVFRISVKYPGRHGWSFRKE 2
           PG+   ++R    +VF++S K+  RHGW   K+
Sbjct: 22  PGVTWVERR---NKVFKVSWKHASRHGWELDKD 51


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 451 SSHTHLPC--YRENHTCRCHCLQYT 519
           S +T  PC  Y+   TC C C+ YT
Sbjct: 873 SHYTPFPCPHYQGGPTCECQCMGYT 897


>SB_10253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 134 QIRNSVLLSHQSRNI-VRRSTL-YKRGSFPDKCKVPRPPWLEFSER 3
           Q+R+ +L+  +  N   RR TL  K  +F + CK P  P  + SER
Sbjct: 37  QLRSKLLVLWRDENRRTRRKTLGAKHKAFTEGCKEPEGPSTDISER 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,074,755
Number of Sequences: 59808
Number of extensions: 542116
Number of successful extensions: 1552
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)