Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10h20
(441 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07) 56 1e-08
SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06) 30 0.74
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58) 29 2.2
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 29 2.2
SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15) 27 5.2
SB_22814| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 27 6.9
SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_9363| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)
Length = 58
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +2
Query: 203 RPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 334
RP + + +KTV R YGG C CVK+RI+RAFLIEEQKIV
Sbjct: 2 RPMKLMHISKPQKTVSRAYGGSRCAACVKERIIRAFLIEEQKIV 45
>SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)
Length = 299
Score = 30.3 bits (65), Expect = 0.74
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 49 IQATTVVQHKIKSKKNSKDTGWPLGLSV 132
I VQH K+KK + DT +P+G++V
Sbjct: 45 ISGEYAVQHSCKNKKETIDTDYPIGMAV 72
>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
Length = 429
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 56 RRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 145
RR++ T SN R++RTP G+ ++ VK P
Sbjct: 159 RRITKTTNSNSTRLIRTP-GQSIHIKVKAP 187
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +1
Query: 10 PAVKKLENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCKKAQEDPKVWSVQEQTPW 189
P VK+ ++AYI T+ + K+K+K T P V K A E+ K + +++ P+
Sbjct: 494 PVVKR---ASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLNDEQKKPY 550
>SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 292 LLDTFMAEDTTINTFHCFLTVAKTGTFSRSSWLDTTEFALALTTPW 155
L+D + + + + HCF+T+ T T ++ S T F L +PW
Sbjct: 542 LIDELVKQSSCPSRAHCFITMTTTQTSTKISIAPTNTFFL---SPW 584
>SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 182 LRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKV 340
++G++ R + S C R V +VY +C +C + V+ + E ++ KV
Sbjct: 201 VKGVRDVRVNKVSERCLRGACVYKVYERCVCTRCTRGACVQG--LREVRVYKV 251
>SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)
Length = 857
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 238 ENSETCLWWCPLP*MCQATHCQSLPH*RTKNCEGPQGTT 354
++ + LW P+P Q + C+S P T E P TT
Sbjct: 223 KHPDLMLWRKPVPKTDQQSECESSPGANTDRLESPARTT 261
>SB_22814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 42
Score = 27.5 bits (58), Expect = 5.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 137 LHTDKPSGHPVSLLFFFDLI 78
LHT +P+GHP ++ FD I
Sbjct: 5 LHTTEPTGHPCHIVCCFDAI 24
>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 280 MCQATHCQSLPH*RTKNCEGPQGTTGEH*VGKEGYKVNFR 399
+CQ HC LP R K+C+ P TG ++ Y+ R
Sbjct: 115 VCQDDHCACLPCWRGKSCDQPD-LTGPPEFEQKEYEAEIR 153
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 301 DNALLDTFMAEDTTINTFHCFLTVAKTGTFSRSSWLDTTEF 179
DN LL + T +N FL + K G + L+ TEF
Sbjct: 155 DNGLLFMETSAKTAMNVNDIFLAIGKKGKKKKGKTLNLTEF 195
>SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/60 (23%), Positives = 25/60 (41%)
Frame = +2
Query: 5 CHQLSKSLKMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKL 184
C L+ + ++ T + +Y K N +V P G Q ++ CG K++L
Sbjct: 36 CSALTSTSALIDHTTIKLFGTYEEKGNLFFVVVAPSGSDKIQPARRVASTRSCGNSKTRL 95
>SB_9363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 278 YGRGHHH-KHVSLFSYGSKDGNVQQV*LAGYHGVCSCTDHTL 156
YG H K + L YG+ G V+++ L GY HTL
Sbjct: 238 YGTSHGLVKEIDLRGYGTSHGPVKEIELRGYGTSYRGPSHTL 279
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,814
Number of Sequences: 59808
Number of extensions: 261793
Number of successful extensions: 770
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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