Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10h17
(641 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36180.1 68417.m05148 leucine-rich repeat family protein cont... 32 0.37
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont... 30 1.5
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont... 30 1.5
At5g46330.1 68418.m05703 leucine-rich repeat transmembrane prote... 29 2.0
At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote... 29 2.0
At2g26330.1 68415.m03159 leucine-rich repeat protein kinase, put... 29 2.0
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote... 29 2.0
At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar... 29 2.0
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar... 29 2.6
At4g29180.1 68417.m04175 leucine-rich repeat protein kinase, put... 29 2.6
At2g06140.1 68415.m00675 hypothetical protein 29 2.6
At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR... 29 2.6
At5g49290.1 68418.m06100 leucine-rich repeat family protein cont... 29 3.5
At3g02130.1 68416.m00180 leucine-rich repeat transmembrane prote... 29 3.5
At3g11330.1 68416.m01378 leucine-rich repeat family protein 28 4.6
At2g04300.1 68415.m00422 leucine-rich repeat protein kinase, put... 28 4.6
At1g66150.1 68414.m07508 leucine-rich repeat protein kinase, put... 28 4.6
At1g09910.1 68414.m01115 expressed protein 28 4.6
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote... 28 6.1
At1g74200.1 68414.m08594 leucine-rich repeat family protein cont... 28 6.1
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 28 6.1
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 28 6.1
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 27 8.0
At3g25020.1 68416.m03127 disease resistance family protein conta... 27 8.0
At3g24982.1 68416.m03125 leucine-rich repeat family protein, 5' ... 27 8.0
At2g32680.1 68415.m03995 disease resistance family protein conta... 27 8.0
At2g28970.1 68415.m03524 leucine-rich repeat protein kinase, put... 27 8.0
>At4g36180.1 68417.m05148 leucine-rich repeat family protein
contains protein kinase domain, Pfam:PF00069; contains
leucine-rich repeats, Pfam:PF00560
Length = 1136
Score = 31.9 bits (69), Expect = 0.37
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +2
Query: 389 LDLVVENADPRYPINLDDFMFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSN 568
LDL +N P+ L GL V + + + + P F + L VNLS+
Sbjct: 505 LDLSKQNMSGEVPVELS-------GLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSS 557
Query: 569 NNLKSLHPETF 601
N+ P+TF
Sbjct: 558 NSFSGEIPQTF 568
>At1g74190.1 68414.m08592 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.1
[Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
Length = 965
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +2
Query: 518 PNAFHGVHDLYAVNLSNNNLKSLHPETFANNKK 616
P F G+ +L A+NLS+NNL + P++ ++ +K
Sbjct: 796 PVEFGGLLELRALNLSHNNLSGVIPKSISSMEK 828
>At1g58190.1 68414.m06605 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1784
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 494 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFAN 607
N IG I P + A+NLS+N+L L PE+F+N
Sbjct: 756 NELIGEI-PRELGDFQRIRALNLSHNSLSGLVPESFSN 792
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 443 FMFKKLGLHQVATVKI-VNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKK 616
F +L +H + + + VN ++ N H + ++ +NLSNN + P +F+ KK
Sbjct: 386 FHLPRLLVHSLHVLDLSVNKFDEWLPNNIGHVLPNISHLNLSNNGFQGNLPSSFSEMKK 444
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 470 QVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 592
Q++ +++ N + + P+ DL+ +NLSNN L + P
Sbjct: 1177 QLSVIELQNCNLENV-PSFIQHQKDLHVINLSNNKLTGVFP 1216
>At5g46330.1 68418.m05703 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1173
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 494 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFAN 607
N+ G+I F G+ + ++NLS N+ P++F N
Sbjct: 683 NNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGN 720
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 461 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFAN 607
G+ + ++ + ++ P +F + L +++LS+NNL PE+ AN
Sbjct: 696 GMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLAN 744
>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
kinase, putative brassinosteroid-insensitive protein
BRI1 - Arabidopsis thaliana, PIR:T09356
Length = 836
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Frame = +2
Query: 332 RQAKCSFLEIGTQKFGDDILDLVVENADPRYPINLDDFMFK-----KLGLHQ-VATVKIV 493
R +FL++ I D V + P +NLD F L H + V I
Sbjct: 212 RSYTLTFLDLQHNNLSGSIPDFFVNGSHPLKTLNLDHNRFSGAVPVSLCKHSLLEEVSIS 271
Query: 494 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFAN 607
++ + P G+ L +++ S N++ P++F+N
Sbjct: 272 HNQLSGSIPRECGGLPHLQSLDFSYNSINGTIPDSFSN 309
>At2g26330.1 68415.m03159 leucine-rich repeat protein kinase,
putative (ERECTA) identical to uncharacterized receptor
protein kinase ERECTA [Arabidopsis thaliana]
gi|1389566|dbj|BAA11869; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain
Length = 976
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 479 TVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKXXXXXXSN 640
T+ + N+ I I P++ + L +NLS N++ + P F N + SN
Sbjct: 431 TLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSN 484
>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
kinase, putative
Length = 773
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 470 QVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLK-SLHPETFANNK 613
+V T+ + NS + P+ + +L ++NLSNN+L SL E FA +K
Sbjct: 76 RVVTLSLPNSNLVGSIPSDLGFLQNLQSLNLSNNSLNGSLPVEFFAADK 124
>At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar to
receptor-like protein kinase (Ipomoea nil) (U77888)
Length = 1029
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 413 DPRYPINLDDFMFKKLGLHQVATVKIVNSTIGYIAP 520
D + DF K+ LH+ TV +V + GYIAP
Sbjct: 863 DSNLEARIADFGLAKMMLHKNETVSMVAGSYGYIAP 898
>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2146
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 174 SANLSIKPSRKTKTPTTYWINMRITNPRNTKRFCTTRTGPVPETAYALYLRDT 332
+ L K S K P+T I + T+ RN+ R R V + A+ L L DT
Sbjct: 2036 NVRLQKKDSDGKKKPSTLEIRLEKTSKRNSSRALAPRFPKVKDEAWWLVLGDT 2088
>At4g29180.1 68417.m04175 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 911
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 524 AFHGVHDLYAVNLSNNNLKSLHPETFANNK 613
AF + L +++LSNNNLK + PE A+ K
Sbjct: 429 AFRNLSLLESLDLSNNNLKGIVPEFLADLK 458
>At2g06140.1 68415.m00675 hypothetical protein
Length = 633
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 179 ESINKTVKKDKDADNLLDQYEDYEPAEYQE 268
ES+++ + DK DNL + E +EP E +E
Sbjct: 588 ESLDRILDLDKKVDNLTTRIEGHEPMESEE 617
>At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1544
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 464 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKXXXXXXSN 640
LH + +++ N P + + LY++NL +N++ L PE F +K SN
Sbjct: 1087 LHFIRELELRNCKFLKFLPKSIGDMDTLYSLNLEGSNIEEL-PEEFGKLEKLVELRMSN 1144
>At5g49290.1 68418.m06100 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 888
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +2
Query: 419 RYPINLDDFMFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPET 598
RY + F F + L+ + + + ++ + + P + L A+NLS+N L S P++
Sbjct: 683 RYDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDS 742
Query: 599 FA 604
F+
Sbjct: 743 FS 744
>At3g02130.1 68416.m00180 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profile: Eukaryotic
protein kinase domain
Length = 985
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 482 VKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKXXXXXXSN 640
+ I N+ + P +F +H L ++LS+N+L P F N K +N
Sbjct: 498 LSIANNNLTGQIPQSFGQLHSLDVLDLSSNHLSGGIPHDFVNLKNLTVLLLNN 550
>At3g11330.1 68416.m01378 leucine-rich repeat family protein
Length = 499
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 512 IAPNAFHGVHDLYAVNLSNNNLKSLHPETFA 604
+ P AF + L +NLSNN L+S+ P++ A
Sbjct: 212 LLPEAFGRIQGLLVLNLSNNKLESI-PDSIA 241
>At2g04300.1 68415.m00422 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 851
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 464 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNK 613
L + + + N+ + P G+ L +NLS NNL P+T K
Sbjct: 397 LTHLQNLDLSNNNLTGGVPEFLAGLKSLLVINLSGNNLSGSVPQTLLQKK 446
>At1g66150.1 68414.m07508 leucine-rich repeat protein kinase,
putative (TMK1) identical to protein kinase TMK1
gi|166888|gb|AAA32876, SP|P43298 Putative receptor
protein kinase TMK1 precursor (EC 2.7.1.-) {Arabidopsis
thaliana}
Length = 942
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 461 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLH-PETFAN 607
GL + + + N+ I + F G+ L +V + NN KS PE+ N
Sbjct: 109 GLASLQVLMLSNNNFDSIPSDVFQGLTSLQSVEIDNNPFKSWEIPESLRN 158
>At1g09910.1 68414.m01115 expressed protein
Length = 675
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 512 IAPNAFHGVHDLYAVNLSNNNL 577
IA + HGV+ LYAVN+ N L
Sbjct: 621 IARHGIHGVYMLYAVNIPGNRL 642
>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1011
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +2
Query: 494 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKK 616
NS G I PN G+ + V+LSNN+L PE FAN K
Sbjct: 540 NSFDGAI-PN-IRGLMGVRRVDLSNNDLSGSIPEYFANFSK 578
>At1g74200.1 68414.m08594 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591 disease resistance protein
[Lycopersicon esculentum] gi|3894383|gb|AAC78591
Length = 302
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 464 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFAN 607
L + + I N+ + + P+ F + DL+++ +SNN L+ P + N
Sbjct: 92 LRSLIMLDISNNNLSGVIPSWFDQLQDLHSLQISNNLLEGEVPISLFN 139
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 27.9 bits (59), Expect = 6.1
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +2
Query: 308 ICSVSQGYRQAKCSFLEIGTQKFGDDILDLVVENADPRYPINLDDFMFK--KLGLHQVAT 481
+ S+SQG + ++L+ T+ FG I + N P+ + + +F K G +A
Sbjct: 190 LSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTACKSGDFDIAN 249
Query: 482 VKIVNSTI-GYIAPNAFHGVHDLYA 553
++ N GY A + + D+ A
Sbjct: 250 KEVDNIVAEGYPASQIINQLFDIVA 274
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 27.9 bits (59), Expect = 6.1
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +2
Query: 308 ICSVSQGYRQAKCSFLEIGTQKFGDDILDLVVENADPRYPINLDDFMFK--KLGLHQVAT 481
+ S+SQG + ++L+ T+ FG I + N P+ + + +F K G +A
Sbjct: 202 LSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTACKSGDFDIAN 261
Query: 482 VKIVNSTI-GYIAPNAFHGVHDLYA 553
++ N GY A + + D+ A
Sbjct: 262 KEVDNIVAEGYPASQIINQLFDIVA 286
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 27.5 bits (58), Expect = 8.0
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = -2
Query: 514 DITNR--AVHDFYSSNLVKSEFFEHEVV*INRVAGICVFDHEIKDIIAELLCTDFEEAAL 341
D+ NR +HD SS LV S+ V + R+ + + D++ ELL + + +
Sbjct: 711 DLFNRKCVLHDSLSS-LVSSDVNLSSTVKVKRMKNWYLLIFLVGDLVVELLSWYEDSSVI 769
Query: 340 GLSVSLRYRAYAVSGTGPVLVV 275
L +++ + +S +G LVV
Sbjct: 770 DLDCTIKVISVKLSKSGSPLVV 791
>At3g25020.1 68416.m03127 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 890
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 518 PNAFHGVHDLYAVNLSNNNLKSLHPE 595
PN F +H+L + LSNN + PE
Sbjct: 406 PNVFKTLHNLEYIALSNNRISGKFPE 431
>At3g24982.1 68416.m03125 leucine-rich repeat family protein, 5'
fragment contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611 (19 copies); contains
similarity to GB:AAD13301 from [Lycopersicon esculentum]
Length = 681
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 518 PNAFHGVHDLYAVNLSNNNLKSLHPE 595
PN F +H+L + LSNN + PE
Sbjct: 438 PNVFKTLHNLEYIALSNNRISGKFPE 463
>At2g32680.1 68415.m03995 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 890
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 473 VATVKIVNSTIGYIAPNA-FHGVHDLYAVNLSNNNLKSLH-PETFANNKK 616
VA +++ G + N+ G H L V+L NNNL S P F N K+
Sbjct: 75 VAVLQLRKCLSGTLKSNSSLFGFHQLRYVDLQNNNLTSSSLPSGFGNLKR 124
>At2g28970.1 68415.m03524 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 786
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +2
Query: 464 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKK 616
L Q+ + + N+++ + P+ + L ++LS NN P+T + +K
Sbjct: 331 LTQIQELDLSNNSLTGLVPSFLANIKSLSLLDLSGNNFTGSVPQTLLDREK 381
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,995,730
Number of Sequences: 28952
Number of extensions: 267199
Number of successful extensions: 948
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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