Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10h15
         (363 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33874| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)                 28   2.6  

>SB_33874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 210 HKKNQYYKKPFYH*PTKCQIVIFKNV*NIF*LPNVYRFVCCINIIFIYXKK 362
           +KK  YY  P +   T    V  +N+  I  L +  RF   IN++F + KK
Sbjct: 250 YKKGAYYSDPIFFLSTALHKVFPENLTKIIMLDSDLRFRNDINLLFQHFKK 300


>SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
          Length = 577

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 56  INTFNIFIPYLVSCVI 103
           +N FNIF+ YL++C +
Sbjct: 152 VNVFNIFVKYLIACTL 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,299,760
Number of Sequences: 59808
Number of extensions: 126272
Number of successful extensions: 161
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)