Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10h14
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.4  
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)         30   2.4  
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)                    29   5.5  
SB_52520| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                28   9.5  
SB_35326| Best HMM Match : IPK (HMM E-Value=0)                         28   9.5  

>SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 466 VVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVKPS 311
           + AT  P+S E + N S+ +++  K+G         T YN+  R   +VKPS
Sbjct: 1   MAATVMPESNEENKNPSVNTYSLNKVGSCG--IGLLTEYNIPPRKGPTVKPS 50


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 329  CSPTSHIVRSTAATQLVLDSYFLRIEGLQAGIH*DLSAVRGSSGNDTVIRQCQ 487
            C P S I+RS  ++ L  +    ++ GLQ   +   S + G+ G D   R C+
Sbjct: 1365 CHPQSWIIRSKISSNLTGEPPKRKLNGLQQVCNNMASVLSGTEGKDNFSRLCR 1417


>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
          Length = 2435

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +3

Query: 411  FKLAFIEISVLSGAAVATTLSFGSVNKTAGLLLIPYLAWLGYASSLSYYIWKNN 572
            F    +++  + G +V   +  G  +    ++ +    W+G   S  YY+WK+N
Sbjct: 1007 FAFVIVQVQGICGTSVIP-VPCGPTDNMKYVVAVGLFIWVGQFISTGYYVWKSN 1059


>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +3

Query: 84  VMANWPALG----SIILPNVGGWANGLFFAGQIRKDNSEKSWYDELKKPSWTPP 233
           ++ NWP       S+++P +  W      +G+       + W  + K+P W PP
Sbjct: 397 ILINWPFQQEYRTSLLIPRIF-WVKDSHMSGECGLGALSRDWVYDRKRPRWRPP 449


>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
          Length = 1276

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +2

Query: 230 PKVGIWSSLDCSLQQH-GICLLPH--LGGM*WFY*RCSPTSHIVRSTAATQLVLDSYFLR 400
           P+  + S+LD  +  H  + LLP   L  + W + RCS       S   ++ +L+SY L 
Sbjct: 721 PEKAMLSALDTFITLHRNLSLLPRPILKNLLWLFARCSFLHKARPSLTTSETILESYVLA 780

Query: 401 IE 406
           ++
Sbjct: 781 LK 782


>SB_52520| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 344

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
 Frame = +1

Query: 301 GRNVMVLLKMQSYLSHCTEYSCYSTGLGLLFSSD*RTSSWHSLRSQCC--PGQQWQRHCH 474
           G + +  L +  Y  +  +   YS G+   FS+  R +   S ++      G  W R+CH
Sbjct: 221 GESDLYKLAVGDYTGNAGDSMTYSNGIA--FSTKDRDNDPQSSKNCVVLHKGAWWYRNCH 278

Query: 475 SAVSIRQPVCYSYHTWLGSDMPAPFLTTSGRTIL 576
           SA ++      +   WL   +  P  T   RT L
Sbjct: 279 SA-NLNANRDENQACWLHDSITKPSRTAHTRTAL 311


>SB_35326| Best HMM Match : IPK (HMM E-Value=0)
          Length = 598

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 113 RTECRPISHYEISSCIQIFHF*ILFNSSKLLSSTK 9
           RTE  P+S  EI  C        +FNSSK + S K
Sbjct: 157 RTEVIPVSGKEIEKCADEMALNDIFNSSKPVDSIK 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,340,001
Number of Sequences: 59808
Number of extensions: 552460
Number of successful extensions: 1255
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)